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PH2017_26_ELK_O_A_scaffold_10_prodigal-single.1__X__X__00125
Bact-VirPH2017_26_ELK_O_A_scaffold_10_prodigal-single.1__X__X__00125
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-82
Domain cluster:
rep: MN988459.1__QIG66732.1__EVB27_062__00062__D25-79
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.66 | 43.0 | 2.86e-01 | 92.2% | 16.5% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 39.0 | 3.90e-01 | 90.6% | 56.5% |
| 4n6tA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 45.0 | 4.24e-01 | 96.9% | 60.8% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 46.0 | 4.07e-01 | 100.0% | 54.5% |
| 3hxlA05 | 3.30.360.90 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.59 | 39.0 | 3.83e-01 | 92.2% | 62.3% |
| 4fchA01 | 2.60.40.3620 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 46.0 | 3.91e-01 | 87.5% | 98.2% |
| 2fa1A00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.59 | 52.0 | 3.89e-01 | 100.0% | 54.1% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 40.0 | 3.72e-01 | 92.2% | 57.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 30.0 | 3.21e-01 | 78.1% | 56.1% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 49.0 | 4.58e-01 | 100.0% | 91.0% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 31.0 | 3.09e-01 | 76.6% | 52.3% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 34.0 | 3.47e-01 | 92.2% | 65.0% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.54 | 39.0 | 2.96e-01 | 93.8% | 30.7% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.54 | 39.0 | 3.55e-01 | 98.4% | 57.0% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 3.75e-01 | 100.0% | 71.8% |
| 3gzrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.40e-01 | 96.9% | 41.1% |
| 1y1uA02 | 2.60.40.630 | Mainly Beta › Sandwich › Immunoglobulin-like › STAT transcription factor, DNA-binding domain | 0.52 | 43.0 | 3.49e-01 | 93.8% | 78.5% |
| 3en2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 44.0 | 3.97e-01 | 100.0% | 90.1% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.51 | 38.0 | 3.58e-01 | 96.9% | 65.8% |
| 4gnxC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 45.0 | 3.23e-01 | 100.0% | 42.6% |
| 3ua3A03 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.50 | 40.0 | 2.98e-01 | 96.9% | 76.8% |
| 1ewfA02 | 3.15.20.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 | 0.50 | 43.0 | 2.87e-01 | 100.0% | 38.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576152 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.70 | 44.0 | 2.81e-01 | 92.2% | 13.3% |
| 3623547 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.69 | 53.0 | 5.23e-01 | 100.0% | 77.1% |
| 5020459 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 46.0 | 4.03e-01 | 98.4% | 46.5% |
| 4951394 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 46.0 | 4.02e-01 | 98.4% | 47.0% |
| 3594714 | 259.1.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain | 0.66 | 50.0 | 4.24e-01 | 82.8% | 86.2% |
| 4981503 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 46.0 | 4.08e-01 | 100.0% | 49.5% |
| 4565271 | 220.1.1.71 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 | 0.66 | 51.0 | 4.11e-01 | 96.9% | 43.2% |
| 3558388 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.65 | 49.0 | 4.92e-01 | 98.4% | 80.0% |
| 5066012 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.64 | 46.0 | 3.88e-01 | 100.0% | 44.5% |
| 4948168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 45.0 | 3.80e-01 | 100.0% | 43.6% |
| 3251381 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.63 | 49.0 | 4.96e-01 | 100.0% | 84.6% |
| 5066013 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.63 | 43.0 | 3.68e-01 | 98.4% | 41.8% |
| 5047301 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 46.0 | 4.12e-01 | 100.0% | 55.6% |
| 5020457 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 43.0 | 3.66e-01 | 98.4% | 41.8% |
| 3255739 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.62 | 48.0 | 4.72e-01 | 100.0% | 78.6% |
| 3222710 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.62 | 49.0 | 4.61e-01 | 100.0% | 71.8% |
| 3236475 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.62 | 50.0 | 3.94e-01 | 100.0% | 42.2% |
| 4975879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 43.0 | 3.68e-01 | 100.0% | 43.6% |
| 3396462 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 46.0 | 4.63e-01 | 100.0% | 81.5% |
| 3914410 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.61 | 48.0 | 4.62e-01 | 100.0% | 75.7% |
| 5032125 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 40.0 | 2.71e-01 | 100.0% | 16.9% |
| 4844428 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.59 | 45.0 | 4.38e-01 | 100.0% | 73.3% |
| 3575242 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.59 | 48.0 | 4.43e-01 | 90.6% | 98.8% |
| 3927455 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.59 | 53.0 | 4.17e-01 | 100.0% | 68.5% |
| 3550635 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.59 | 47.0 | 4.57e-01 | 100.0% | 80.0% |
| 4947833 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 52.0 | 4.17e-01 | 100.0% | 52.8% |
| 5013672 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.58 | 42.0 | 4.26e-01 | 100.0% | 78.5% |
| 4084495 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.58 | 52.0 | 4.40e-01 | 100.0% | 86.7% |
| 3788285 | 395.1.1.4 ↗ | few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 | 0.57 | 41.0 | 4.54e-01 | 89.1% | 100.0% |
| 3301049 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.56 | 43.0 | 3.53e-01 | 100.0% | 45.0% |
| 3673789 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.55 | 37.0 | 3.68e-01 | 89.1% | 67.6% |
| 4016343 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.54 | 44.0 | 3.27e-01 | 93.8% | 81.6% |
| 5058144 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 48.0 | 3.72e-01 | 100.0% | 65.7% |
| 3710585 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 47.0 | 3.81e-01 | 96.9% | 59.2% |
| 3603359 | 4.1.1.459 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29994 | 0.53 | 40.0 | 3.36e-01 | 93.8% | 47.3% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.53 | 40.0 | 3.73e-01 | 93.8% | 66.3% |
| 4927236 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.53 | 42.0 | 3.83e-01 | 96.9% | 65.9% |
| 5016164 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 46.0 | 3.56e-01 | 100.0% | 51.7% |
| 3282536 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 41.0 | 3.91e-01 | 98.4% | 72.5% |
| 3383391 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 45.0 | 4.10e-01 | 100.0% | 88.6% |
| 5017212 | 11.1.1.1443 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 | 0.52 | 40.0 | 3.35e-01 | 93.8% | 47.8% |
| 3997529 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 38.0 | 2.58e-01 | 84.4% | 62.7% |
| 3832534 | 243.3.1.26 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 | 0.51 | 41.0 | 3.61e-01 | 96.9% | 58.9% |
| 3781244 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.51 | 40.0 | 3.44e-01 | 92.2% | 89.6% |
| 4330094 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.50 | 41.0 | 3.67e-01 | 95.3% | 64.4% |