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PH2017_26_ELK_O_A_scaffold_10_prodigal-single.1__X__X__00412

Bact-Vir

PH2017_26_ELK_O_A_scaffold_10_prodigal-single.1__X__X__00412

Identity

Kingdom:
phage

Quality

96.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63_158-168
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.91 84.0 6.20e-01 97.3% 100.0%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.76 57.0 5.23e-01 78.4% 73.4%
2qeuB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.73 57.0 4.73e-01 85.1% 60.2%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.67 52.0 4.97e-01 83.8% 90.6%
1e5rB02 1.10.1720.10 Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain 0.65 45.0 4.31e-01 71.6% 63.1%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.63 48.0 4.34e-01 85.1% 79.6%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 47.0 4.53e-01 82.4% 97.6%
1j2zA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.61 44.0 4.62e-01 78.4% 85.1%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 41.0 3.57e-01 98.6% 45.7%
3t57A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.58 40.0 4.04e-01 73.0% 88.0%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.58 41.0 3.26e-01 75.7% 76.2%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 41.0 3.73e-01 77.0% 61.0%
5f42A02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.57 41.0 4.03e-01 78.4% 70.7%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.55 40.0 4.12e-01 79.7% 90.0%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.55 33.0 3.05e-01 85.1% 41.5%
3hsqA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.54 39.0 4.06e-01 78.4% 86.8%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 37.0 3.27e-01 70.3% 77.6%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.54 39.0 4.12e-01 78.4% 92.5%
3a9zA02 1.10.260.50 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.52 39.0 3.69e-01 81.1% 75.6%
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 45.0 3.59e-01 100.0% 57.4%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 43.0 3.14e-01 98.6% 77.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
49646 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.92 84.0 6.23e-01 97.3% 99.4%
4275525 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.90 84.0 6.09e-01 98.6% 95.6%
4950881 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.75 60.0 4.99e-01 85.1% 59.2%
4989327 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.75 59.0 4.89e-01 85.1% 56.2%
5027258 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.74 55.0 4.72e-01 79.7% 65.0%
4960186 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.70 54.0 4.80e-01 85.1% 67.3%
5054723 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.69 54.0 5.22e-01 85.1% 92.9%
5065130 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.67 52.0 4.99e-01 85.1% 92.9%
5068709 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.65 50.0 4.76e-01 85.1% 87.6%
5010441 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.62 47.0 4.12e-01 83.8% 55.7%
4130656 208.1.1.3 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Acetyltransf_11 0.61 47.0 3.24e-01 83.8% 31.5%
3424514 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.61 42.0 3.59e-01 85.1% 44.2%
4260881 208.1.1.25 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Acetyltransf_11 0.61 46.0 3.22e-01 82.4% 29.4%
3953005 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 45.0 3.59e-01 78.4% 41.3%
3183400 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 47.0 3.35e-01 83.8% 86.2%
4081382 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.59 45.0 3.21e-01 82.4% 79.6%
4937262 1188.1.1.1 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.59 50.0 3.55e-01 97.3% 68.3%
3315608 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.58 42.0 3.79e-01 77.0% 74.3%
4559356 208.1.1.47 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, Acetyltransf_11, Hexapep_2 0.58 44.0 3.10e-01 83.8% 31.0%
4987104 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.57 42.0 3.90e-01 81.1% 95.9%
4348932 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.56 38.0 3.30e-01 70.3% 84.2%
D2 medium residues 64-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02627.26 best CMD 30.5 3.90e-07 72.3% 71.4%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.97 91.0 7.24e-01 100.0% 54.8%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.78 58.0 5.56e-01 77.7% 73.6%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.77 57.0 5.03e-01 77.7% 83.1%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.76 57.0 5.18e-01 77.7% 63.6%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.75 56.0 5.30e-01 78.7% 71.4%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.74 58.0 5.84e-01 81.9% 83.0%
8gq6B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.68 46.0 4.05e-01 93.6% 49.2%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 53.0 5.22e-01 81.9% 78.6%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 3.70e-01 72.3% 67.6%
1n4kA02 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.60 51.0 4.41e-01 93.6% 79.7%
4ui9Y03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 46.0 4.91e-01 96.8% 93.8%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.60 47.0 4.48e-01 86.2% 87.7%
3gz1A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 3.80e-01 96.8% 52.1%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 47.0 3.76e-01 96.8% 43.3%
6t0bf00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.58 47.0 4.64e-01 100.0% 83.3%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 46.0 4.56e-01 89.4% 80.2%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.57 41.0 3.74e-01 96.8% 56.8%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 42.0 3.57e-01 78.7% 93.1%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 41.0 3.54e-01 78.7% 89.9%
2gz6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.55 46.0 3.16e-01 95.7% 30.6%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 41.0 3.61e-01 79.8% 88.4%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 48.0 4.09e-01 96.8% 79.3%
3rkvA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 48.0 4.07e-01 96.8% 82.3%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 3.94e-01 96.8% 72.2%
2xevB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 4.28e-01 96.8% 84.7%
2if4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 4.03e-01 96.8% 66.2%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 48.0 4.09e-01 100.0% 77.8%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 39.0 3.59e-01 78.7% 76.2%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.34e-01 95.7% 51.9%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 3.25e-01 98.9% 47.5%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.51 37.0 3.90e-01 76.6% 83.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
49646 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.96 91.0 7.21e-01 100.0% 54.4%
4272840 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.96 91.0 6.98e-01 100.0% 50.3%
4275525 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.91 86.0 6.72e-01 100.0% 51.7%
4950881 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.84 58.0 5.16e-01 70.2% 60.0%
5018286 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.82 56.0 5.54e-01 70.2% 76.8%
5004097 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.80 55.0 5.00e-01 70.2% 65.0%
5076342 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.79 57.0 5.62e-01 74.5% 80.0%
3970329 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.78 58.0 5.63e-01 77.7% 74.3%
5027258 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.78 58.0 5.32e-01 77.7% 65.0%
3235 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.76 57.0 5.04e-01 78.7% 83.6%
3227 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.75 56.0 5.19e-01 77.7% 67.5%
4480143 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.75 57.0 5.37e-01 78.7% 72.7%
4951600 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.74 58.0 5.22e-01 81.9% 61.6%
5008125 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.74 56.0 5.18e-01 78.7% 66.1%
5002888 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.74 58.0 5.04e-01 81.9% 57.8%
5075048 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.74 57.0 5.17e-01 81.9% 63.2%
5013708 608.1.1.1 alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.73 57.0 5.43e-01 81.9% 75.5%
3842854 109.4.1.343 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAB3GAP2_C 0.64 58.0 4.56e-01 100.0% 48.9%
3665948 109.4.1.1273 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.64 53.0 4.63e-01 100.0% 59.3%
3196470 109.59.1.0 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain 0.63 48.0 4.89e-01 97.9% 84.3%
3605666 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 44.0 4.16e-01 87.2% 60.9%
3592461 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 49.0 4.27e-01 100.0% 58.6%
3183936 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 42.0 3.70e-01 83.0% 50.4%
3205299 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.60 55.0 4.34e-01 100.0% 79.5%
3689807 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 55.0 4.39e-01 100.0% 86.3%
3572847 604.1.1.162 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4716 0.58 43.0 4.01e-01 76.6% 73.9%
4995044 1076.1.1.0 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.58 46.0 3.56e-01 86.2% 87.7%
3840735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 4.00e-01 92.6% 64.5%
3844591 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 40.0 3.75e-01 76.6% 79.1%
3220120 226.1.1.2 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.55 44.0 3.70e-01 86.2% 75.9%
3287311 109.4.1.2330 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31120 0.53 48.0 4.66e-01 100.0% 96.2%
3957217 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.95e-01 100.0% 96.9%
3929823 109.46.1.6 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH_Armc9 0.50 44.0 3.76e-01 98.9% 68.4%