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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00015

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00015

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-160
PDB
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.74 46.0 5.74e-01 79.1% 100.0%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.69 44.0 5.06e-01 76.3% 88.9%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 41.0 5.05e-01 76.3% 94.4%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.67 39.0 4.69e-01 78.4% 85.3%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 34.0 4.13e-01 81.3% 76.7%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.66 38.0 4.76e-01 71.9% 96.3%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.64 41.0 4.21e-01 76.3% 66.4%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.64 47.0 4.23e-01 76.3% 75.1%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.64 41.0 4.24e-01 76.3% 67.9%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 38.0 4.71e-01 71.2% 100.0%
3w9iD03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.64 46.0 5.26e-01 73.4% 100.0%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.64 39.0 4.65e-01 75.5% 93.3%
3ezuA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.63 47.0 4.60e-01 76.3% 95.9%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 40.0 4.88e-01 75.5% 100.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 41.0 4.84e-01 80.6% 97.9%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.62 46.0 4.96e-01 76.3% 99.2%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 38.0 4.25e-01 74.8% 80.8%
2v50D07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.61 41.0 4.86e-01 74.8% 100.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 4.69e-01 76.3% 100.0%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.60 36.0 4.39e-01 74.1% 98.8%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.60 39.0 4.55e-01 73.4% 94.8%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 36.0 4.31e-01 73.4% 92.1%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 4.68e-01 74.1% 100.0%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 38.0 4.44e-01 76.3% 94.6%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 37.0 4.48e-01 82.7% 98.9%
5qinA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 33.0 3.96e-01 84.2% 84.7%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.57e-01 77.7% 93.2%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.64e-01 77.7% 98.0%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 32.0 4.01e-01 80.6% 91.0%
1gh8A00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 38.0 4.49e-01 77.7% 100.0%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 36.0 4.12e-01 75.5% 86.3%
3c0wA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 35.0 3.78e-01 97.8% 68.3%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.52e-01 77.0% 95.9%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 39.0 4.62e-01 74.8% 100.0%
2op5B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 4.72e-01 76.3% 100.0%
1q8kA03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.58 40.0 4.34e-01 77.7% 84.5%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 4.41e-01 71.9% 100.0%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 4.38e-01 73.4% 94.8%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 4.60e-01 76.3% 100.0%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 4.61e-01 79.1% 100.0%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.43e-01 75.5% 96.1%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.36e-01 76.3% 92.5%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 44.0 4.05e-01 82.7% 100.0%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 4.30e-01 75.5% 95.9%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 4.27e-01 73.4% 96.9%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 47.0 4.09e-01 93.5% 92.2%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.55 45.0 4.63e-01 88.5% 90.2%
1hxmB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 4.25e-01 82.7% 94.3%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 4.06e-01 77.7% 91.4%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.54 28.0 3.69e-01 87.1% 100.0%
3aawA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.53 40.0 3.82e-01 80.6% 82.4%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.56e-01 82.0% 91.9%
2ogkD00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 42.0 4.20e-01 87.8% 95.8%
6f7bA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 40.0 3.24e-01 84.9% 93.5%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 29.0 3.60e-01 71.2% 100.0%
3uimA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 30.0 3.56e-01 84.2% 91.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4080330 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.70 39.0 4.61e-01 77.7% 77.0%
3312923 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 46.0 5.40e-01 74.1% 98.9%
3317802 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.68 46.0 5.41e-01 74.1% 100.0%
4059572 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.68 40.0 4.52e-01 81.3% 74.5%
5020004 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.68 38.0 4.89e-01 72.7% 100.0%
3421583 304.27.1.0 a+b two layers › Alpha-beta plaits › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › Formiminotransferase domain of formiminotransferase-cyclodeaminase. 0.68 46.0 5.15e-01 82.0% 90.5%
4951741 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 40.0 4.79e-01 77.7% 90.0%
4128067 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.67 40.0 4.50e-01 82.0% 75.5%
2843481 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.67 42.0 5.11e-01 73.4% 100.0%
4947614 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 39.0 4.67e-01 76.3% 87.8%
4664239 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.67 40.0 4.76e-01 75.5% 90.0%
4039920 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.66 40.0 4.80e-01 74.8% 91.1%
4205746 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.66 39.0 4.48e-01 80.6% 78.1%
5027649 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.66 43.0 4.62e-01 82.7% 76.7%
4201490 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.66 39.0 4.68e-01 78.4% 90.0%
5012647 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 36.0 4.66e-01 70.5% 98.7%
4981653 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.65 42.0 5.07e-01 74.1% 100.0%
3721769 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.64 39.0 4.43e-01 78.4% 81.0%
4409092 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 37.0 4.46e-01 71.9% 89.4%
4086765 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.64 40.0 4.47e-01 82.0% 78.2%
4116209 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.64 40.0 4.74e-01 78.4% 94.4%
4944755 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.64 39.0 4.70e-01 77.7% 93.3%
4184306 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.64 39.0 4.72e-01 78.4% 94.4%
4221596 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.63 39.0 4.31e-01 82.0% 74.8%
5051350 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 44.0 4.96e-01 82.7% 100.0%
4683313 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.62 39.0 4.20e-01 82.0% 73.3%
4316814 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 40.0 4.61e-01 78.4% 94.7%
3341279 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 42.0 4.58e-01 82.7% 86.4%
4160031 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.62 39.0 4.27e-01 82.7% 76.5%
4635441 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.61 41.0 4.77e-01 79.1% 100.0%
4413612 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 39.0 4.18e-01 82.0% 74.2%
3789510 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 37.0 4.46e-01 76.3% 97.6%
4096306 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.60 38.0 4.17e-01 82.0% 76.5%
4389430 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.59 37.0 4.14e-01 81.3% 79.1%
5021042 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 37.0 4.45e-01 78.4% 100.0%
999861 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 38.0 4.36e-01 72.7% 93.8%
4988803 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.56 47.0 3.35e-01 88.5% 82.8%
5032322 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.56 39.0 4.53e-01 82.7% 99.0%
3740284 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 34.0 4.15e-01 84.2% 98.8%
2845594 304.61.1.1 a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem 0.56 40.0 4.23e-01 73.4% 87.5%
185044 304.61.1.1 a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem 0.55 40.0 4.12e-01 77.7% 77.4%
5278 304.13.1.1 a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB 0.55 45.0 4.63e-01 88.5% 90.2%
5053065 225.1.1.7 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.55 40.0 3.34e-01 76.3% 85.6%
3690206 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.54 38.0 4.08e-01 78.4% 84.2%