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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00027
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00027
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-123
Domain cluster:
rep: MN018232.1__QDH50655.1__X__00189__D210-318
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.82 | 77.0 | 7.31e-01 | 100.0% | 100.0% |
| 3buuB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.72 | 56.0 | 4.25e-01 | 80.8% | 89.5% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.70 | 42.0 | 5.13e-01 | 71.7% | 93.8% |
| 2h6oA01 | 2.60.40.2800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 61.0 | 5.31e-01 | 98.0% | 85.2% |
| 6x1kA01 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.65 | 45.0 | 4.35e-01 | 71.7% | 100.0% |
| 3ghgB02 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.64 | 57.0 | 4.20e-01 | 99.0% | 95.0% |
| 3pijA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.61 | 56.0 | 4.86e-01 | 100.0% | 98.0% |
| 3hrdB01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.61 | 44.0 | 3.69e-01 | 74.7% | 86.0% |
| 2wy3B00 | 2.60.40.1990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 53.0 | 4.76e-01 | 98.0% | 81.0% |
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.60 | 44.0 | 3.44e-01 | 76.8% | 46.3% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.59 | 49.0 | 3.59e-01 | 90.9% | 95.3% |
| 4hfsA00 | 2.60.120.1270 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 49.0 | 3.89e-01 | 89.9% | 82.8% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.59 | 53.0 | 4.73e-01 | 99.0% | 97.1% |
| 2ervA00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.58 | 52.0 | 4.56e-01 | 99.0% | 99.3% |
| 3kf3A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.58 | 52.0 | 4.33e-01 | 100.0% | 96.6% |
| 4ccdA03 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.58 | 52.0 | 4.16e-01 | 100.0% | 97.0% |
| 5jtwA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.65e-01 | 100.0% | 84.3% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 48.0 | 3.69e-01 | 89.9% | 55.8% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 48.0 | 3.67e-01 | 90.9% | 55.1% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 44.0 | 3.71e-01 | 84.8% | 98.3% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 47.0 | 3.93e-01 | 87.9% | 72.4% |
| 6y43A01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.56 | 50.0 | 4.43e-01 | 99.0% | 92.5% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.56 | 40.0 | 3.66e-01 | 74.7% | 79.4% |
| 1lwuC01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.56 | 50.0 | 4.34e-01 | 99.0% | 94.0% |
| 2cwsA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 3.81e-01 | 99.0% | 96.0% |
| 3ai4A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 47.0 | 3.46e-01 | 90.9% | 50.8% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 49.0 | 4.26e-01 | 100.0% | 94.2% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 4.27e-01 | 99.0% | 83.7% |
| 3qq2B00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.55 | 50.0 | 3.72e-01 | 100.0% | 96.4% |
| 1r0mA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.59e-01 | 74.7% | 96.2% |
| 1lj5A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.55 | 35.0 | 3.00e-01 | 71.7% | 40.9% |
| 1ju3A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 46.0 | 3.73e-01 | 100.0% | 99.1% |
| 5dl5A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 41.0 | 2.69e-01 | 78.8% | 34.6% |
| 4qpwA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 48.0 | 4.28e-01 | 99.0% | 98.6% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.54 | 47.0 | 4.54e-01 | 98.0% | 100.0% |
| 1gbgA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 47.0 | 3.75e-01 | 100.0% | 98.6% |
| 4bq2D01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.53 | 48.0 | 3.88e-01 | 99.0% | 69.3% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 47.0 | 4.16e-01 | 100.0% | 94.6% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.84e-01 | 92.9% | 96.9% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 46.0 | 3.33e-01 | 99.0% | 73.0% |
| 6fokB01 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.52 | 42.0 | 2.64e-01 | 89.9% | 94.6% |
| 3jb4C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 3.50e-01 | 100.0% | 69.7% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.44e-01 | 100.0% | 90.5% |
| 6hoxA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 3.51e-01 | 100.0% | 87.5% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.51 | 44.0 | 4.22e-01 | 100.0% | 81.9% |
| 5jtwA01 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.50 | 37.0 | 3.40e-01 | 79.8% | 90.6% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.50 | 35.0 | 2.32e-01 | 73.7% | 21.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2581320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 69.0 | 6.33e-01 | 100.0% | 93.6% |
| 2512673 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 66.0 | 6.10e-01 | 100.0% | 79.4% |
| 5080210 | 71.1.1.8 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like | 0.69 | 53.0 | 4.09e-01 | 80.8% | 88.6% |
| 4047703 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.68 | 51.0 | 4.27e-01 | 78.8% | 81.2% |
| 4498332 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.66 | 50.0 | 4.19e-01 | 79.8% | 81.8% |
| 5033737 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.66 | 52.0 | 4.15e-01 | 82.8% | 92.0% |
| 2077356 | 11.35.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › m04 immunoevasin › m04 immunoevasin › m04gp34like | 0.65 | 59.0 | 5.18e-01 | 100.0% | 81.2% |
| 901 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.65 | 50.0 | 3.98e-01 | 80.8% | 91.5% |
| 5042583 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.64 | 50.0 | 5.09e-01 | 100.0% | 86.3% |
| 3979319 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.64 | 54.0 | 3.83e-01 | 90.9% | 95.9% |
| 5081501 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.63 | 49.0 | 4.06e-01 | 82.8% | 97.7% |
| 3529047 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.62 | 44.0 | 3.32e-01 | 73.7% | 77.7% |
| 4957722 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.61 | 45.0 | 4.03e-01 | 77.8% | 100.0% |
| 5022112 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.60 | 43.0 | 3.49e-01 | 74.7% | 96.8% |
| 5043357 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 48.0 | 4.78e-01 | 100.0% | 81.9% |
| 3485290 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.60 | 53.0 | 4.08e-01 | 100.0% | 69.4% |
| 3849839 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.60 | 42.0 | 4.27e-01 | 73.7% | 98.0% |
| 5010985 | 10.1.1.117 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin | 0.60 | 53.0 | 3.83e-01 | 100.0% | 70.0% |
| None | — | 0.60 | 48.0 | 3.01e-01 | 100.0% | 16.4% | |
| 4060896 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.59 | 46.0 | 3.70e-01 | 84.8% | 88.2% |
| 3220055 | 11.1.1.1023 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MATH | 0.59 | 53.0 | 4.88e-01 | 100.0% | 96.9% |
| 4373556 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.59 | 51.0 | 4.07e-01 | 93.9% | 97.4% |
| 1157836 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.58 | 48.0 | 4.10e-01 | 87.9% | 72.4% |
| 3211509 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.58 | 53.0 | 4.82e-01 | 100.0% | 95.4% |
| 358775 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.58 | 48.0 | 4.00e-01 | 87.9% | 68.1% |
| 3237716 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.58 | 52.0 | 4.65e-01 | 100.0% | 90.0% |
| 3243158 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.57 | 52.0 | 4.68e-01 | 99.0% | 91.9% |
| 3214023 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.57 | 51.0 | 4.73e-01 | 97.0% | 97.6% |
| 5033918 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.56 | 44.0 | 3.65e-01 | 84.8% | 97.8% |
| 3838164 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.56 | 50.0 | 4.11e-01 | 100.0% | 97.8% |
| 2458553 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.56 | 46.0 | 4.09e-01 | 88.9% | 85.2% |
| 5030450 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.55 | 49.0 | 4.32e-01 | 97.0% | 80.0% |
| 4991701 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 48.0 | 3.82e-01 | 100.0% | 74.0% |
| 3838829 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.54 | 49.0 | 4.02e-01 | 100.0% | 95.7% |
| 3293710 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.54 | 45.0 | 3.34e-01 | 89.9% | 77.3% |
| 4940074 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 4.12e-01 | 90.9% | 82.1% |
| 4873170 | 11.1.1.253 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LIFR_D2 | 0.54 | 45.0 | 4.29e-01 | 100.0% | 77.6% |
| 4471281 | 10.1.1.89 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26321 | 0.54 | 48.0 | 3.67e-01 | 100.0% | 88.1% |
| 4305531 | 10.32.1.8 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 | 0.54 | 47.0 | 4.11e-01 | 99.0% | 93.5% |
| 3290473 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.17e-01 | 89.9% | 88.0% |
| 3928295 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.53 | 46.0 | 3.78e-01 | 100.0% | 74.0% |
| 3395610 | 4252.1.1.15 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30558 | 0.53 | 41.0 | 3.36e-01 | 84.8% | 99.5% |
| 5040902 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 48.0 | 4.50e-01 | 100.0% | 92.5% |
| 3625061 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.52 | 47.0 | 3.81e-01 | 100.0% | 85.8% |
| 4984542 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 4.13e-01 | 99.0% | 80.0% |
| 3222246 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 47.0 | 4.53e-01 | 100.0% | 91.8% |
| 3813157 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.52 | 43.0 | 3.02e-01 | 89.9% | 62.0% |
| 3942565 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 46.0 | 4.33e-01 | 100.0% | 85.8% |
| 5071729 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 4.15e-01 | 100.0% | 83.6% |
| 1307904 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.51 | 41.0 | 2.76e-01 | 86.9% | 32.3% |
| 3888744 | 3570.1.1.0 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily | 0.51 | 37.0 | 3.54e-01 | 75.8% | 87.8% |
| 3258964 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 37.0 | 3.90e-01 | 96.0% | 86.7% |
| 3316409 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.50 | 35.0 | 2.79e-01 | 73.7% | 39.5% |
| 3874979 | 11.1.1.70 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bile_Hydr_Trans | 0.50 | 44.0 | 4.11e-01 | 99.0% | 89.6% |