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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00132

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00132

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 99-130
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.93 80.0 5.52e-01 100.0% 31.4%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.87 71.0 6.06e-01 100.0% 56.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.87 71.0 5.57e-01 100.0% 43.8%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 67.0 5.47e-01 100.0% 49.3%
2be4A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.80 67.0 4.79e-01 100.0% 31.7%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.80 69.0 5.15e-01 100.0% 40.5%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.77 57.0 4.56e-01 81.2% 40.6%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.76 60.0 4.42e-01 100.0% 31.4%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 4.46e-01 93.8% 36.6%
6p10B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.74 58.0 4.42e-01 100.0% 35.2%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.74 62.0 3.58e-01 100.0% 26.4%
3qrxA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.72 53.0 4.46e-01 96.9% 45.6%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.72 58.0 3.58e-01 100.0% 15.5%
3ccgA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.71 57.0 3.53e-01 100.0% 15.9%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 4.69e-01 100.0% 67.1%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 58.0 3.34e-01 100.0% 69.9%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.70 57.0 3.34e-01 100.0% 11.2%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.69 59.0 5.34e-01 100.0% 66.7%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 51.0 3.82e-01 93.8% 29.4%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 52.0 3.16e-01 90.6% 41.4%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.66 56.0 3.56e-01 100.0% 44.4%
3ufbA01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.65 55.0 3.52e-01 96.9% 52.2%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.65 52.0 3.69e-01 96.9% 29.0%
2n50A00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.64 46.0 3.56e-01 100.0% 32.9%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.64 52.0 4.39e-01 100.0% 54.1%
1jq5A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 50.0 3.11e-01 100.0% 51.5%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 2.96e-01 100.0% 66.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3174002 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.93 79.0 6.65e-01 100.0% 58.2%
4928364 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.86 71.0 4.66e-01 100.0% 23.2%
4982784 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.84 67.0 5.70e-01 100.0% 53.3%
4865046 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.80 65.0 4.07e-01 100.0% 16.3%
1175633 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 59.0 4.72e-01 100.0% 40.5%
4038157 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.75 57.0 5.21e-01 100.0% 62.0%
4070374 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.68 58.0 3.32e-01 100.0% 47.9%
5049631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 54.0 3.63e-01 93.8% 21.4%
3948385 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.66 53.0 4.75e-01 96.9% 74.0%