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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00144

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00144

Identity

Kingdom:
phage

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-25_88-138
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3danA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 47.0 2.81e-01 75.4% 69.8%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 3.40e-01 70.8% 39.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 39.0 3.86e-01 87.7% 63.9%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.44e-01 86.2% 87.1%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 38.0 3.79e-01 87.7% 65.2%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 37.0 4.18e-01 92.3% 100.0%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 43.0 3.73e-01 84.6% 95.3%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.56 37.0 4.20e-01 86.2% 100.0%
2fgtA02 3.10.450.310 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 3.22e-01 80.0% 50.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 49.0 3.81e-01 100.0% 87.2%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.96e-01 75.4% 100.0%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.65e-01 93.8% 69.2%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 34.0 3.40e-01 83.1% 60.0%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 47.0 3.03e-01 100.0% 96.8%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 3.24e-01 78.5% 66.1%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.52 40.0 4.08e-01 100.0% 87.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948100 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 48.0 3.18e-01 83.1% 67.5%
3255497 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 48.0 3.30e-01 83.1% 73.8%
3259329 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 48.0 3.32e-01 84.6% 76.1%
3252383 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 48.0 3.30e-01 84.6% 71.1%
3252995 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 48.0 3.34e-01 84.6% 74.7%
3248340 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.62 48.0 3.33e-01 84.6% 76.9%
3264438 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.61 47.0 3.20e-01 84.6% 71.0%
3251513 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.61 47.0 3.17e-01 84.6% 69.6%
3267244 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.60 46.0 3.16e-01 84.6% 71.2%
3266952 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.60 46.0 3.18e-01 84.6% 70.4%
4064452 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 55.0 4.20e-01 100.0% 85.7%
3263284 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.59 45.0 3.12e-01 84.6% 68.9%
4976925 821.1.1.4 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.59 43.0 3.28e-01 78.5% 83.0%
4945015 821.1.1.4 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.58 41.0 3.43e-01 76.9% 95.0%
3247905 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.58 46.0 3.23e-01 89.2% 74.2%
3385461 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.58 52.0 3.99e-01 100.0% 92.4%
3258216 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.57 44.0 3.09e-01 84.6% 73.8%
3573620 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.55 46.0 4.83e-01 98.5% 100.0%
5037776 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 41.0 2.95e-01 87.7% 41.8%
5079843 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 43.0 4.36e-01 90.8% 90.8%
3518898 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.51 32.0 3.71e-01 81.5% 93.3%
D2 high residues 29-85
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.72 42.0 3.37e-01 93.0% 28.9%
1x8mA01 2.60.120.520 Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 0.67 45.0 3.54e-01 70.2% 54.9%
1sq4A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 48.0 3.77e-01 78.9% 59.5%
1ywkC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 54.0 3.62e-01 94.7% 69.6%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.66 39.0 3.19e-01 91.2% 29.7%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 53.0 3.60e-01 100.0% 70.6%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 44.0 3.56e-01 77.2% 61.3%
3myxA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 42.0 3.50e-01 73.7% 59.1%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.27e-01 98.2% 63.5%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.61 49.0 4.03e-01 93.0% 84.7%
4aqlA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.60 50.0 3.87e-01 94.7% 44.3%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.59 51.0 3.78e-01 100.0% 77.9%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 42.0 3.45e-01 93.0% 43.0%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.76e-01 94.7% 55.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 2.88e-01 89.5% 33.3%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.53e-01 86.0% 91.0%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.34e-01 94.7% 34.4%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.54 33.0 3.60e-01 93.0% 80.5%
3cymA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 37.0 2.62e-01 73.7% 50.2%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.26e-01 100.0% 69.2%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.53 42.0 4.09e-01 91.2% 83.1%
6m9sD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 45.0 3.78e-01 100.0% 56.4%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 40.0 2.68e-01 94.7% 88.3%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 42.0 3.55e-01 96.5% 51.5%
3daxB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 45.0 2.61e-01 98.2% 26.6%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.60e-01 100.0% 67.3%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.25e-01 91.2% 76.3%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1396630 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.66 48.0 3.57e-01 78.9% 47.7%
1030915 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.65 47.0 3.56e-01 78.9% 51.8%
4270486 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.64 53.0 3.53e-01 98.2% 67.8%
3475111 221.1.1.112 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.64 45.0 3.62e-01 75.4% 86.1%
1240179 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.61 50.0 4.78e-01 94.7% 85.3%
4004354 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.61 53.0 4.06e-01 100.0% 94.1%
4256769 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.61 50.0 4.22e-01 94.7% 58.0%
4007792 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.60 51.0 3.97e-01 100.0% 88.9%
3828760 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 41.0 4.46e-01 78.9% 93.3%
4039929 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 44.0 4.28e-01 100.0% 72.3%
4007473 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.59 50.0 3.89e-01 100.0% 91.1%
3573620 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.59 41.0 4.04e-01 73.7% 73.3%
3436078 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.58 51.0 4.05e-01 100.0% 96.7%
5068179 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.57 43.0 3.78e-01 100.0% 53.3%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 47.0 4.63e-01 93.0% 88.3%
4010514 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 47.0 3.45e-01 100.0% 68.0%
2723972 1143.1.1.1 beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 37.0 3.34e-01 75.4% 48.1%
4019077 928.1.1.0 few secondary structure elements › Bubble protein › Bubble protein › Bubble protein 0.56 41.0 4.38e-01 96.5% 92.0%
3729267 708.1.2.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 0.55 43.0 3.50e-01 86.0% 76.4%
4652295 5084.5.1.52 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › SlpA_C 0.55 41.0 2.34e-01 80.7% 8.7%
1030908 10.12.1.63 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.55 43.0 3.74e-01 94.7% 54.4%
3271441 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 44.0 4.53e-01 93.0% 98.2%
5050121 4025.1.1.0 alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit 0.55 44.0 2.89e-01 100.0% 20.0%
4146384 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 45.0 3.45e-01 94.7% 40.8%
3830422 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 40.0 3.06e-01 82.5% 37.2%
3923675 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 45.0 4.35e-01 94.7% 92.3%
4022213 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 37.0 2.16e-01 100.0% 7.6%
3810129 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.53 40.0 3.86e-01 82.5% 83.1%
5062005 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 44.0 3.48e-01 94.7% 43.3%
3966884 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.53 36.0 2.75e-01 71.9% 31.5%
4535258 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.52 43.0 3.59e-01 98.2% 93.6%
4315769 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 38.0 3.10e-01 78.9% 97.3%
3701507 4138.1.1.0 few secondary structure elements › Granulin repeat › Granulin repeat › Granulin repeat 0.52 35.0 3.37e-01 71.9% 70.0%
3986557 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.52 43.0 3.54e-01 98.2% 80.9%
3912697 292.2.1.3 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 0.51 38.0 3.11e-01 91.2% 41.8%
3642794 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 41.0 3.81e-01 100.0% 72.0%
3516794 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.51 41.0 3.18e-01 94.7% 63.6%
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.51 42.0 3.61e-01 94.7% 63.4%
372 2.1.1.91 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_C 0.50 42.0 3.60e-01 100.0% 67.3%
3677761 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.50 39.0 3.06e-01 91.2% 39.2%