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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00164
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 55-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03473.24 best | MOSC | 43.4 | 4.40e-11 | 75.8% | 91.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oruA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.80 | 70.0 | 7.00e-01 | 89.9% | 90.1% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.80 | 40.0 | 5.43e-01 | 86.5% | 89.7% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.79 | 39.0 | 5.37e-01 | 86.0% | 89.7% |
| 5yhhA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.73 | 65.0 | 6.31e-01 | 97.8% | 84.6% |
| 1o67C00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.70 | 66.0 | 6.17e-01 | 97.8% | 82.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966956 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.90 | 65.0 | 7.28e-01 | 87.6% | 91.0% |
| 3971647 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.88 | 63.0 | 7.04e-01 | 87.6% | 89.7% |
| 4965314 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.83 | 66.0 | 6.93e-01 | 90.4% | 87.9% |
| 4104961 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.82 | 39.0 | 5.56e-01 | 85.4% | 92.2% |
| 5001027 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.82 | 39.0 | 5.61e-01 | 85.4% | 93.3% |
| 3961100 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.81 | 59.0 | 6.42e-01 | 73.6% | 94.7% |
| 4175961 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.81 | 71.0 | 7.01e-01 | 90.4% | 89.7% |
| 3200577 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.80 | 71.0 | 6.85e-01 | 91.0% | 93.3% |
| 3971295 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.79 | 42.0 | 5.91e-01 | 91.6% | 100.0% |
| 3396811 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.78 | 40.0 | 5.29e-01 | 86.0% | 88.0% |
| 3954113 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.76 | 72.0 | 6.62e-01 | 97.8% | 84.9% |
| 3590326 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.76 | 41.0 | 5.40e-01 | 86.0% | 91.4% |
| 3282994 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.75 | 71.0 | 6.56e-01 | 97.8% | 80.9% |
| 3721100 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.75 | 67.0 | 5.42e-01 | 93.8% | 94.6% |
| 3408265 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.74 | 63.0 | 5.19e-01 | 87.6% | 94.2% |
| 3695262 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.73 | 65.0 | 5.12e-01 | 92.1% | 96.7% |
| 3385988 | 1.1.15.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC | 0.73 | 69.0 | 6.39e-01 | 97.2% | 83.7% |
| 3947153 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.73 | 64.0 | 5.46e-01 | 92.1% | 93.8% |
| 2163960 | 1.1.15.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC,YiiM_3-alpha | 0.73 | 65.0 | 6.31e-01 | 97.8% | 84.6% |
| 3222943 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.72 | 62.0 | 5.30e-01 | 88.2% | 92.8% |
| 3519816 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.72 | 61.0 | 5.43e-01 | 87.6% | 93.8% |
| 4033559 | 1.1.15.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC,YiiM_3-alpha | 0.71 | 66.0 | 6.15e-01 | 97.8% | 83.3% |
| 91 | 1.1.15.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › MOSC,YiiM_3-alpha | 0.71 | 66.0 | 6.12e-01 | 97.8% | 81.2% |
| 4000169 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.70 | 51.0 | 4.43e-01 | 74.2% | 93.8% |
| None | — | 0.70 | 60.0 | 4.97e-01 | 89.9% | 95.3% |
D2
medium
residues 1-54
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 57.0 | 4.59e-01 | 70.4% | 97.0% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.81 | 61.0 | 4.51e-01 | 81.5% | 42.5% |
| 3hulA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.76 | 58.0 | 4.47e-01 | 81.5% | 58.3% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.75 | 55.0 | 5.80e-01 | 77.8% | 89.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 51.0 | 4.61e-01 | 74.1% | 55.4% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 54.0 | 3.83e-01 | 81.5% | 27.2% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 51.0 | 4.20e-01 | 77.8% | 56.6% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.69 | 50.0 | 3.74e-01 | 77.8% | 32.4% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.68 | 47.0 | 4.04e-01 | 72.2% | 59.3% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.68 | 55.0 | 4.41e-01 | 88.9% | 68.2% |
| 3v9rB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 49.0 | 4.48e-01 | 77.8% | 77.8% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 48.0 | 4.25e-01 | 77.8% | 64.1% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.64 | 50.0 | 4.16e-01 | 81.5% | 60.0% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 43.0 | 4.12e-01 | 75.9% | 60.0% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 43.0 | 4.40e-01 | 72.2% | 88.0% |
| 1vt0M02 | 1.10.1740.160 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.59 | 47.0 | 4.03e-01 | 88.9% | 53.3% |
| 1lujB01 | 1.10.10.490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT | 0.59 | 41.0 | 4.13e-01 | 75.9% | 79.2% |
| 3no6A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.58 | 43.0 | 2.83e-01 | 81.5% | 76.2% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.53 | 39.0 | 3.56e-01 | 87.0% | 58.5% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.51 | 38.0 | 3.55e-01 | 87.0% | 65.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022880 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.84 | 65.0 | 5.87e-01 | 81.5% | 64.3% |
| 3792952 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.78 | 58.0 | 5.18e-01 | 79.6% | 72.0% |
| 3698138 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.77 | 61.0 | 5.26e-01 | 87.0% | 64.7% |
| 3726207 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.76 | 53.0 | 3.98e-01 | 75.9% | 32.9% |
| 3248269 | 174.1.1.82 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7789 | 0.72 | 51.0 | 3.94e-01 | 75.9% | 33.6% |
| 3277747 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.72 | 50.0 | 5.48e-01 | 74.1% | 100.0% |
| 4387462 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.70 | 49.0 | 3.23e-01 | 72.2% | 43.4% |
| 3102719 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.69 | 52.0 | 3.62e-01 | 79.6% | 26.3% |
| 3360637 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.68 | 52.0 | 4.24e-01 | 83.3% | 60.0% |
| 4887715 | 568.1.1.4 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH | 0.67 | 46.0 | 3.89e-01 | 72.2% | 41.9% |
| 3415139 | 109.4.1.910 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C | 0.63 | 44.0 | 2.71e-01 | 75.9% | 15.3% |
| 3373425 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.56 | 48.0 | 2.94e-01 | 94.4% | 55.5% |
| 3506842 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.51 | 40.0 | 3.26e-01 | 94.4% | 65.0% |