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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00171
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00171
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-85
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 45.0 | 3.93e-01 | 100.0% | 49.0% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 50.0 | 4.21e-01 | 87.7% | 84.5% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.62 | 48.0 | 3.80e-01 | 84.6% | 81.0% |
| 5mj6A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 40.0 | 3.79e-01 | 86.2% | 55.0% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 45.0 | 3.82e-01 | 100.0% | 48.6% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.60 | 40.0 | 3.19e-01 | 70.8% | 95.7% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 40.0 | 4.01e-01 | 87.7% | 72.7% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 40.0 | 4.09e-01 | 100.0% | 78.7% |
| 4nlcA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 40.0 | 2.80e-01 | 78.5% | 45.8% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.56 | 42.0 | 3.85e-01 | 83.1% | 86.7% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.56 | 46.0 | 3.33e-01 | 100.0% | 62.1% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.56 | 46.0 | 4.15e-01 | 95.4% | 86.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 38.0 | 3.90e-01 | 90.8% | 75.4% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.56 | 46.0 | 3.97e-01 | 98.5% | 65.5% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 42.0 | 2.70e-01 | 87.7% | 84.3% |
| 3gd0A01 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.55 | 45.0 | 3.08e-01 | 93.8% | 40.0% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 45.0 | 3.52e-01 | 96.9% | 87.9% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 36.0 | 3.16e-01 | 98.5% | 40.9% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.54 | 40.0 | 3.81e-01 | 80.0% | 89.7% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.68e-01 | 90.8% | 59.8% |
| 1mgpA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 43.0 | 3.44e-01 | 96.9% | 87.1% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 42.0 | 3.35e-01 | 90.8% | 59.9% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 44.0 | 3.66e-01 | 95.4% | 62.2% |
| 1stzA03 | 3.30.390.60 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 | 0.53 | 39.0 | 3.57e-01 | 81.5% | 92.1% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.52 | 44.0 | 3.45e-01 | 98.5% | 88.7% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 43.0 | 3.24e-01 | 98.5% | 80.9% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 37.0 | 3.22e-01 | 76.9% | 61.5% |
| 7y8sB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.74e-01 | 95.4% | 69.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.51 | 40.0 | 3.83e-01 | 95.4% | 75.0% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.51 | 39.0 | 3.22e-01 | 83.1% | 72.6% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 2.97e-01 | 96.9% | 41.0% |
| 1yn3A00 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 3.13e-01 | 98.5% | 49.0% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.38e-01 | 92.3% | 53.2% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.51 | 38.0 | 3.64e-01 | 95.4% | 67.9% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 40.0 | 3.38e-01 | 90.8% | 54.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4199253 | 1.1.1.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 | 0.67 | 48.0 | 3.38e-01 | 75.4% | 27.3% |
| 4669741 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.67 | 54.0 | 4.85e-01 | 90.8% | 82.1% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 42.0 | 4.52e-01 | 78.5% | 81.8% |
| 3400735 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.64 | 42.0 | 4.53e-01 | 80.0% | 81.8% |
| 3942510 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 53.0 | 4.77e-01 | 96.9% | 80.0% |
| 4623707 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 54.0 | 4.84e-01 | 98.5% | 82.1% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.63 | 41.0 | 4.22e-01 | 89.2% | 71.7% |
| 5001166 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 49.0 | 3.89e-01 | 86.2% | 42.2% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.62 | 53.0 | 4.81e-01 | 98.5% | 85.6% |
| 4958689 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.60 | 49.0 | 5.05e-01 | 100.0% | 100.0% |
| 3695427 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.59 | 39.0 | 3.82e-01 | 93.8% | 61.3% |
| 3328353 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.58 | 39.0 | 4.08e-01 | 90.8% | 76.7% |
| 3787008 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.57 | 39.0 | 3.96e-01 | 93.8% | 71.9% |
| 3798375 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.57 | 48.0 | 3.25e-01 | 100.0% | 60.4% |
| 4425813 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.57 | 48.0 | 4.04e-01 | 98.5% | 62.5% |
| 3574017 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.57 | 38.0 | 3.80e-01 | 96.9% | 65.7% |
| 3323677 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.57 | 39.0 | 4.04e-01 | 96.9% | 80.0% |
| 4028910 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.57 | 39.0 | 3.90e-01 | 93.8% | 70.8% |
| 3789140 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.56 | 46.0 | 3.76e-01 | 95.4% | 57.9% |
| 3930342 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.56 | 37.0 | 3.97e-01 | 95.4% | 81.8% |
| 3458276 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.55 | 38.0 | 3.81e-01 | 92.3% | 73.8% |
| 3377737 | 4.1.1.302 ↗ | beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O | 0.55 | 42.0 | 3.65e-01 | 84.6% | 79.0% |
| 3734369 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 46.0 | 3.04e-01 | 98.5% | 50.8% |
| 3295690 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.54 | 37.0 | 3.79e-01 | 96.9% | 73.8% |
| 5023153 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 44.0 | 3.55e-01 | 89.2% | 90.4% |
| 3987692 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.54 | 40.0 | 4.00e-01 | 95.4% | 77.1% |
| 223777 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.54 | 39.0 | 3.78e-01 | 78.5% | 78.7% |
| 4022609 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.53 | 43.0 | 3.49e-01 | 95.4% | 65.7% |
| 3678850 | 4.1.1.302 ↗ | beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O | 0.53 | 42.0 | 3.39e-01 | 89.2% | 65.2% |
| 1175478 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.53 | 39.0 | 3.87e-01 | 100.0% | 75.0% |
| 3924385 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.53 | 37.0 | 2.48e-01 | 76.9% | 45.2% |
| 4932697 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 34.0 | 3.44e-01 | 86.2% | 66.2% |
| 4619601 | 10.32.1.48 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 | 0.52 | 37.0 | 3.07e-01 | 76.9% | 69.6% |
| 3265723 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 34.0 | 3.66e-01 | 95.4% | 90.0% |
| 3502158 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.51 | 43.0 | 3.31e-01 | 96.9% | 40.0% |
| 5054792 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.51 | 41.0 | 3.78e-01 | 100.0% | 67.1% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.51 | 39.0 | 3.77e-01 | 95.4% | 74.0% |
| 3959732 | 10.39.1.0 ↗ | beta sandwiches › jelly-roll › Soluble domain of MmpS4 › Soluble domain of MmpS4 | 0.50 | 42.0 | 3.85e-01 | 92.3% | 84.7% |
| 4662939 | 1077.1.1.1 ↗ | few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS | 0.50 | 33.0 | 3.29e-01 | 83.1% | 64.3% |