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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00175

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00175

Identity

Kingdom:
phage

Quality

89.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-279
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5v1qB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 61.0 6.06e-01 98.5% 100.0%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 45.0 5.00e-01 100.0% 96.3%
3f4wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 44.0 5.01e-01 100.0% 97.6%
1fhvA01 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.59 38.0 4.36e-01 86.4% 86.9%
3eqzB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 29.0 4.11e-01 99.6% 100.0%
1losA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 43.0 4.84e-01 99.6% 95.8%
3ciwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 54.0 4.99e-01 100.0% 81.3%
3gy1B02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.58 41.0 4.35e-01 98.9% 81.5%
5xd7A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.57 40.0 4.30e-01 72.2% 81.9%
7pd2B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 53.0 4.85e-01 100.0% 77.0%
1jmkC01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 33.0 4.11e-01 100.0% 90.7%
4dadA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 27.0 3.74e-01 98.5% 92.2%
3ctlA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 44.0 4.83e-01 99.6% 99.5%
3ijlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.56 40.0 4.41e-01 100.0% 88.2%
2fliC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 43.0 4.73e-01 100.0% 98.2%
5tcgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 41.0 4.34e-01 99.6% 82.3%
4v1xA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 4.35e-01 91.9% 94.1%
3cfyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 27.0 3.71e-01 99.3% 94.6%
2zadA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 41.0 4.48e-01 100.0% 92.2%
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 51.0 4.88e-01 100.0% 87.2%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 45.0 4.80e-01 100.0% 99.2%
2vepA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 45.0 4.77e-01 100.0% 98.3%
3snkA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 25.0 3.72e-01 100.0% 99.2%
1dtnA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 39.0 4.28e-01 100.0% 88.3%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.53 26.0 3.57e-01 100.0% 87.7%
3ro6A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 40.0 4.29e-01 100.0% 87.9%
2pgeA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 40.0 4.40e-01 100.0% 92.6%
1tkkA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 41.0 4.34e-01 99.6% 88.5%
3n4fA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 43.0 4.42e-01 100.0% 87.1%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 26.0 3.54e-01 100.0% 87.2%
1s2gB00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 29.0 3.67e-01 98.5% 87.4%
1sfjB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 42.0 4.50e-01 100.0% 97.0%
3cyjA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 41.0 4.35e-01 98.2% 92.4%
1tzzA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 41.0 4.26e-01 98.9% 87.5%
2p0oA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 4.43e-01 94.5% 96.2%
1bmtA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.51 27.0 3.43e-01 99.3% 83.5%
3nntA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 4.50e-01 99.6% 94.2%
3ugvA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 40.0 4.27e-01 98.5% 92.4%
1kczA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 39.0 4.17e-01 99.6% 91.5%
2gdqA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.50 41.0 4.24e-01 97.8% 88.0%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4984802 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 68.0 6.45e-01 100.0% 92.1%
5068510 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 68.0 6.41e-01 100.0% 98.7%
4958130 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 67.0 6.09e-01 98.9% 89.6%
4958342 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 67.0 5.96e-01 98.9% 89.3%
5068739 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 67.0 5.92e-01 99.6% 90.7%
2870555 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 67.0 6.25e-01 100.0% 97.2%
4997990 2002.1.1.224 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM 0.70 66.0 5.96e-01 100.0% 92.1%
5024568 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 48.0 5.51e-01 89.7% 90.9%
5067044 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.70 65.0 6.35e-01 100.0% 90.2%
4988865 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 54.0 5.39e-01 98.2% 77.1%
4971215 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 65.0 5.83e-01 98.5% 81.9%
4240570 2002.1.1.125 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM 0.69 65.0 5.79e-01 98.9% 83.0%
5031546 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 64.0 6.18e-01 97.8% 89.8%
3969428 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 65.0 5.91e-01 98.9% 88.0%
4099491 2002.1.1.125 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM 0.69 65.0 5.75e-01 98.9% 82.1%
4958341 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 65.0 5.89e-01 99.3% 89.0%
2439603 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 56.0 6.08e-01 83.9% 99.6%
5049709 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 65.0 5.78e-01 99.3% 85.9%
5057587 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.69 66.0 6.07e-01 100.0% 86.0%
4081910 2002.1.1.121 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.68 64.0 5.92e-01 98.5% 91.5%
5051548 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 64.0 5.94e-01 98.9% 90.9%
5056789 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 65.0 6.23e-01 100.0% 93.9%
5010430 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 64.0 6.06e-01 100.0% 86.4%
4416801 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.68 64.0 5.69e-01 98.9% 83.5%
2323965 2002.1.1.125 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM 0.67 63.0 5.82e-01 98.2% 91.7%
5070796 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.83e-01 99.6% 92.5%
5043714 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 64.0 5.73e-01 99.3% 86.9%
4939862 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 54.0 5.52e-01 98.2% 84.5%
4974940 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 64.0 5.79e-01 99.3% 89.7%
4190564 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.49e-01 99.3% 81.7%
4955076 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.95e-01 98.5% 90.6%
4929847 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.89e-01 99.3% 93.9%
5046504 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.86e-01 99.3% 88.4%
4960360 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.80e-01 98.9% 91.8%
4978129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.40e-01 98.9% 74.1%
4989502 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 63.0 5.31e-01 98.9% 70.0%
4934129 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 62.0 5.73e-01 98.9% 92.5%
4558171 2002.1.1.125 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM 0.66 62.0 5.62e-01 98.5% 84.2%
4990319 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 54.0 5.75e-01 100.0% 93.9%
5004837 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 61.0 6.17e-01 100.0% 96.7%
4935701 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 62.0 5.96e-01 99.3% 94.8%
4929206 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 62.0 5.77e-01 99.3% 89.0%
4968541 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 63.0 5.94e-01 100.0% 86.7%
4967590 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 62.0 5.57e-01 98.9% 78.3%
4939989 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 62.0 5.65e-01 98.9% 86.7%
4987866 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 61.0 5.63e-01 99.3% 92.2%
4927187 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 61.0 5.68e-01 98.9% 89.6%
4974059 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 61.0 5.73e-01 98.9% 91.7%
5062088 2002.1.1.449 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF3641 0.65 61.0 5.83e-01 98.5% 92.9%
5059056 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 61.0 5.75e-01 98.9% 94.1%
4943844 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 52.0 5.48e-01 98.9% 91.2%
2322645 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 60.0 5.09e-01 98.2% 69.8%
5022715 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 58.0 5.78e-01 99.6% 92.1%
4875495 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 53.0 5.70e-01 85.7% 100.0%
5042766 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 57.0 5.86e-01 98.5% 98.8%
4993115 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.61 40.0 4.82e-01 99.6% 97.3%
169576 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.60 44.0 5.01e-01 100.0% 97.6%
4174971 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.60 44.0 5.01e-01 100.0% 98.6%
None 0.59 44.0 4.74e-01 100.0% 89.6%
4944022 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.59 44.0 4.89e-01 100.0% 96.7%
4943680 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 44.0 4.83e-01 100.0% 94.6%
4996536 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 46.0 5.02e-01 100.0% 99.1%
4980051 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.57 44.0 4.87e-01 100.0% 97.7%
4158714 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.57 44.0 4.63e-01 100.0% 87.3%
4929269 2002.1.1.37 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim 0.57 45.0 4.54e-01 99.6% 81.9%
4947777 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.57 43.0 4.56e-01 100.0% 86.5%
5058338 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 27.0 3.88e-01 99.3% 99.2%
4933244 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 45.0 4.76e-01 100.0% 98.7%
4121113 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 44.0 4.70e-01 100.0% 97.9%
4288291 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 44.0 4.73e-01 100.0% 99.1%
4153642 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 43.0 4.65e-01 100.0% 98.7%
4472472 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 35.0 4.27e-01 90.5% 100.0%
None 0.53 44.0 4.61e-01 100.0% 96.3%
1721557 7579.1.1.18 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 0.53 35.0 4.11e-01 99.6% 92.9%
4961711 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.52 27.0 3.69e-01 98.2% 99.3%
4993078 2487.1.1.8 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.51 45.0 3.86e-01 92.7% 95.3%