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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00204
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00204
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-72_92-124
Domain cluster:
rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04717.19 best | Phage_base_V | 47.9 | 1.90e-12 | 98.8% | 97.3% |
D2
high
residues 138-151_166-269
D3
medium
residues 504-609
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3whkA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 42.0 | 4.88e-01 | 73.6% | 98.6% |
| 3ghaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 52.0 | 4.36e-01 | 94.3% | 68.3% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.60 | 45.0 | 4.05e-01 | 81.1% | 82.7% |
| 4nt1A00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.59 | 47.0 | 3.85e-01 | 86.8% | 61.0% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.59 | 40.0 | 3.81e-01 | 70.8% | 78.9% |
| 1d2zB00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 42.0 | 3.79e-01 | 75.5% | 74.0% |
| 7csoA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.55 | 39.0 | 3.18e-01 | 74.5% | 82.3% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 38.0 | 3.81e-01 | 72.6% | 97.2% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.51 | 34.0 | 3.47e-01 | 95.3% | 68.2% |
| 4gycA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 45.0 | 3.63e-01 | 100.0% | 85.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3738033 | 148.1.3.15 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 | 0.74 | 54.0 | 5.93e-01 | 77.4% | 95.3% |
| 4302786 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 54.0 | 5.93e-01 | 79.2% | 97.6% |
| 5080893 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.72 | 50.0 | 5.66e-01 | 75.5% | 95.0% |
| 3337198 | 148.1.3.15 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 | 0.72 | 53.0 | 5.24e-01 | 76.4% | 93.6% |
| 4267142 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 49.0 | 5.54e-01 | 78.3% | 100.0% |
| 3591364 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 51.0 | 5.47e-01 | 75.5% | 93.3% |
| 3287880 | 148.1.3.236 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31033 | 0.70 | 61.0 | 5.68e-01 | 94.3% | 98.5% |
| 4309019 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.68 | 47.0 | 5.15e-01 | 84.0% | 88.2% |
| 4150365 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.68 | 46.0 | 5.09e-01 | 84.0% | 87.1% |
| 4030272 | 148.1.3.374 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Yip1 | 0.62 | 49.0 | 4.61e-01 | 85.8% | 94.0% |
| 3638103 | 1174.1.1.2 ↗ | alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › LtrA | 0.60 | 54.0 | 4.27e-01 | 100.0% | 93.3% |
| 3719175 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.57 | 42.0 | 3.70e-01 | 78.3% | 93.1% |
| 3263402 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.52 | 38.0 | 3.07e-01 | 75.5% | 86.7% |
D4
medium
residues 611-694
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.61 | 33.0 | 3.80e-01 | 70.2% | 75.4% |
| 4j5tA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.56 | 49.0 | 3.06e-01 | 98.8% | 45.8% |
| 2o36A02 | 1.10.1370.10 | Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › Neurolysin, domain 3 | 0.55 | 49.0 | 3.17e-01 | 100.0% | 42.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3370771 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 39.0 | 2.62e-01 | 70.2% | 70.1% |
| 3232151 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.55 | 48.0 | 3.48e-01 | 100.0% | 83.1% |
| 3280523 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.52 | 36.0 | 3.43e-01 | 79.8% | 60.0% |
| 3510358 | 517.1.1.1 ↗ | beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta | 0.52 | 36.0 | 3.05e-01 | 71.4% | 63.6% |
| 5073682 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 38.0 | 3.22e-01 | 79.8% | 71.0% |