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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00252

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00252

Identity

Kingdom:
phage

Quality

63.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
D2 medium residues 220-274
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.73 49.0 4.61e-01 70.9% 92.6%
4gdnC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.71 48.0 2.96e-01 70.9% 75.7%
4fnvA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.71 54.0 3.46e-01 85.5% 96.5%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.69 47.0 2.93e-01 70.9% 74.8%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.69 47.0 2.91e-01 70.9% 16.7%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.68 45.0 3.68e-01 70.9% 37.3%
3ucqA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 45.0 4.04e-01 70.9% 98.7%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 50.0 3.55e-01 81.8% 62.0%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.64 50.0 3.93e-01 85.5% 52.5%
5z0uA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 43.0 3.73e-01 70.9% 92.2%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 51.0 3.48e-01 90.9% 67.3%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 52.0 3.48e-01 92.7% 49.8%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.64 51.0 3.48e-01 90.9% 68.6%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 51.0 3.58e-01 90.9% 67.6%
5bv3D01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.63 43.0 3.42e-01 70.9% 79.5%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.62 46.0 3.67e-01 80.0% 44.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.62 42.0 3.61e-01 70.9% 47.8%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 49.0 4.00e-01 90.9% 54.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 46.0 3.50e-01 83.6% 75.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 46.0 2.96e-01 90.9% 57.1%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 40.0 2.74e-01 70.9% 86.8%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 3.76e-01 96.4% 66.4%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.66e-01 70.9% 51.9%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 50.0 3.60e-01 100.0% 57.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 49.0 3.08e-01 98.2% 37.7%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.34e-01 87.3% 92.0%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.57 46.0 3.00e-01 96.4% 53.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 37.0 3.49e-01 81.8% 53.7%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.96e-01 100.0% 59.8%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 46.0 3.58e-01 96.4% 38.9%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 44.0 2.95e-01 92.7% 23.2%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 46.0 3.80e-01 96.4% 86.9%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.56 38.0 3.49e-01 72.7% 98.7%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.26e-01 100.0% 90.7%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.79e-01 98.2% 79.1%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.68e-01 87.3% 50.2%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.45e-01 89.1% 35.2%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 40.0 2.93e-01 85.5% 49.4%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.71e-01 98.2% 48.9%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 36.0 2.37e-01 70.9% 15.2%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 35.0 2.27e-01 70.9% 12.5%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 44.0 3.52e-01 94.5% 70.0%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 40.0 2.60e-01 90.9% 46.6%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 35.0 3.45e-01 72.7% 67.2%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.65e-01 98.2% 50.3%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 38.0 2.92e-01 81.8% 56.3%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 37.0 2.29e-01 81.8% 21.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585692 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.73 57.0 4.17e-01 85.5% 54.0%
None — 0.73 57.0 4.94e-01 85.5% 95.3%
3908899 213.1.1.35 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.73 54.0 4.44e-01 80.0% 52.5%
3415735 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.73 57.0 4.73e-01 85.5% 85.3%
4979564 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 54.0 5.04e-01 89.1% 64.3%
None — 0.71 57.0 4.20e-01 87.3% 57.9%
3331262 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.70 59.0 4.88e-01 92.7% 64.2%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 47.0 3.00e-01 74.5% 16.0%
3951220 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.67 45.0 2.74e-01 70.9% 11.1%
4015773 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.67 51.0 4.26e-01 85.5% 82.0%
4027965 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 43.0 2.66e-01 70.9% 11.2%
4028641 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 50.0 2.77e-01 85.5% 6.3%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.64 50.0 4.18e-01 85.5% 65.3%
5035481 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.63 48.0 3.59e-01 81.8% 48.9%
4291626 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 46.0 3.88e-01 80.0% 57.9%
4302456 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 48.0 4.12e-01 85.5% 63.3%
3217145 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.62 45.0 2.82e-01 80.0% 91.0%
5038443 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 41.0 3.77e-01 70.9% 53.3%
3649824 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 45.0 2.83e-01 83.6% 40.3%
4474202 809.1.1.7 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.60 41.0 3.73e-01 70.9% 56.4%
3271846 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.59 40.0 4.09e-01 70.9% 80.0%
3735222 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 47.0 2.87e-01 98.2% 37.2%
4088247 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.58 48.0 2.88e-01 100.0% 40.0%
1171961 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.57 39.0 3.74e-01 70.9% 58.7%
3691332 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.57 46.0 2.83e-01 98.2% 40.8%
4836809 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.57 38.0 2.76e-01 70.9% 27.9%
4979756 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.57 49.0 3.70e-01 96.4% 82.2%
4026604 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.57 39.0 3.15e-01 70.9% 37.3%
3928876 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.56 45.0 2.82e-01 89.1% 89.1%
3933159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.00e-01 100.0% 42.0%
3197066 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.56 41.0 2.50e-01 81.8% 86.5%
3624656 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 44.0 4.06e-01 90.9% 69.3%
3790805 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 46.0 3.65e-01 96.4% 79.2%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 44.0 2.93e-01 96.4% 63.6%
3254501 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 44.0 2.95e-01 100.0% 57.9%
3755410 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 44.0 2.71e-01 100.0% 34.8%
4134791 5.1.3.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.54 44.0 2.94e-01 100.0% 56.4%
3254908 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 42.0 2.82e-01 100.0% 60.0%
3527683 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 41.0 2.66e-01 100.0% 45.6%
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 42.0 3.03e-01 94.5% 46.2%
3435547 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.53 41.0 3.33e-01 90.9% 94.2%
4002675 5.1.3.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.53 43.0 2.83e-01 96.4% 59.3%
4304850 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 41.0 2.70e-01 98.2% 50.3%
145091 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 35.0 2.27e-01 70.9% 12.5%
4988607 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 39.0 3.15e-01 87.3% 56.2%
3556954 109.4.1.69 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.52 42.0 2.80e-01 98.2% 58.2%
None — 0.52 41.0 2.67e-01 98.2% 37.9%
5052931 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.52e-01 96.4% 31.6%
3932184 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 41.0 2.71e-01 98.2% 54.2%
5039195 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.52 40.0 2.83e-01 92.7% 67.9%
4140248 5.1.4.577 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › YqgU 0.51 42.0 2.73e-01 98.2% 40.0%
4942967 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.07e-01 85.5% 56.2%
5047088 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 42.0 2.89e-01 96.4% 53.2%
3786775 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.51 41.0 2.44e-01 96.4% 22.6%
4619221 5.1.3.136 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DPPIV_N, PD40 0.50 40.0 2.68e-01 94.5% 60.0%
D3 medium residues 439-514
PDB
Domain cluster: representative
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3860607 109.4.1.3403 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_7, TPR_8, TPR_10, TPR_12 0.57 41.0 2.26e-01 73.7% 18.7%
4969778 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 39.0 2.78e-01 82.9% 64.1%
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.52 41.0 2.95e-01 89.5% 74.4%