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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00258
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00258
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64
Domain cluster:
rep: BML_coassembly_scaffold_13_prodigal-single.1__X__X__00303__D4-66
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.76 | 52.0 | 4.30e-01 | 72.1% | 97.3% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.68 | 56.0 | 5.13e-01 | 100.0% | 77.5% |
| 3eujB00 | 1.10.225.40 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain | 0.65 | 55.0 | 4.87e-01 | 93.4% | 67.8% |
| 1vb5A01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.65 | 53.0 | 4.76e-01 | 96.7% | 76.6% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.64 | 48.0 | 4.93e-01 | 80.3% | 94.7% |
| 2wglA00 | 1.10.4190.10 | Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF | 0.61 | 50.0 | 3.55e-01 | 95.1% | 51.7% |
| 2vlaA01 | 1.10.10.2080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 45.0 | 4.17e-01 | 83.6% | 67.9% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 49.0 | 4.11e-01 | 100.0% | 59.8% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 44.0 | 3.87e-01 | 90.2% | 81.2% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.11e-01 | 86.9% | 69.7% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.56 | 38.0 | 3.44e-01 | 85.2% | 49.4% |
| 1o69A01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 45.0 | 3.15e-01 | 100.0% | 32.2% |
| 3o6xA02 | 1.20.120.1560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.54 | 38.0 | 2.88e-01 | 73.8% | 32.4% |
| 2keyA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.54 | 43.0 | 3.64e-01 | 93.4% | 65.2% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 3.86e-01 | 80.3% | 86.0% |
| 3qnfA04 | 1.10.3480.20 | Mainly Alpha › Orthogonal Bundle › TorD-like › | 0.53 | 43.0 | 3.27e-01 | 100.0% | 41.8% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 42.0 | 3.57e-01 | 100.0% | 82.2% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 41.0 | 3.42e-01 | 91.8% | 56.3% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.51 | 34.0 | 2.99e-01 | 70.5% | 43.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3664940 | 192.4.1.22 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 | 0.73 | 50.0 | 4.57e-01 | 72.1% | 82.5% |
| 3622876 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.69 | 58.0 | 4.61e-01 | 98.4% | 56.3% |
| 3554564 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.69 | 47.0 | 3.16e-01 | 72.1% | 31.0% |
| 3715812 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 56.0 | 4.00e-01 | 100.0% | 39.5% |
| 4395930 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.66 | 53.0 | 3.56e-01 | 91.8% | 25.6% |
| 3587927 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.63 | 50.0 | 4.73e-01 | 98.4% | 72.0% |
| 2104833 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 3.67e-01 | 91.8% | 35.1% |
| 3203026 | 3640.1.1.8 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Tri-helical | 0.59 | 44.0 | 3.93e-01 | 83.6% | 72.6% |
| 3327097 | 207.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 | 0.58 | 50.0 | 3.13e-01 | 100.0% | 32.5% |
| 3993206 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.58 | 44.0 | 4.23e-01 | 83.6% | 94.3% |
| 4025977 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.56 | 37.0 | 4.10e-01 | 82.0% | 93.3% |
| 4995297 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.56 | 42.0 | 3.52e-01 | 83.6% | 69.6% |
| 3413790 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.54 | 39.0 | 3.70e-01 | 80.3% | 62.5% |
| 3701495 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 44.0 | 3.14e-01 | 100.0% | 44.5% |
| 5052279 | 632.1.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › BE_C | 0.53 | 36.0 | 2.99e-01 | 72.1% | 91.7% |
| 5032334 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.53 | 42.0 | 3.72e-01 | 86.9% | 73.3% |