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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00284

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00284

Identity

Kingdom:
phage

Quality

93.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-92
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.74 46.0 5.53e-01 80.4% 100.0%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.70 54.0 4.50e-01 82.6% 48.1%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.67 43.0 5.02e-01 84.8% 95.2%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.61 43.0 4.11e-01 89.1% 62.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.60 34.0 4.05e-01 79.3% 87.7%
4ammA00 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.58 43.0 2.83e-01 78.3% 96.4%
2xrhA00 1.20.120.1430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle 0.57 45.0 4.42e-01 84.8% 86.0%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.55 39.0 4.13e-01 85.9% 84.8%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.51 39.0 3.32e-01 82.6% 86.7%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 41.0 4.12e-01 98.9% 90.1%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.50 34.0 3.59e-01 70.7% 81.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974693 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.80 67.0 5.08e-01 89.1% 40.5%
1323187 219.1.1.38 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C93 0.80 67.0 5.28e-01 89.1% 45.9%
3786534 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 62.0 4.89e-01 100.0% 47.8%
146744 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 54.0 4.52e-01 82.6% 48.7%
5034224 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.69 53.0 4.29e-01 81.5% 44.4%
3721511 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.68 62.0 4.63e-01 100.0% 42.2%
4993029 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.67 50.0 4.23e-01 82.6% 48.0%
3741085 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.67 59.0 4.79e-01 100.0% 51.1%
5060353 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 59.0 4.55e-01 100.0% 57.6%
4955823 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.65 59.0 4.29e-01 100.0% 52.0%
4987387 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.65 58.0 4.61e-01 100.0% 63.2%
3719109 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 58.0 4.58e-01 100.0% 50.5%
5033329 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 55.0 4.41e-01 92.4% 63.4%
5021112 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 57.0 4.53e-01 100.0% 62.1%
5006929 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 57.0 4.15e-01 100.0% 75.7%
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 56.0 4.43e-01 100.0% 60.5%
3935262 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.60 42.0 3.72e-01 96.7% 48.9%
3564283 109.4.1.570 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.54 47.0 2.78e-01 98.9% 13.2%
4887185 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.52 35.0 3.37e-01 77.2% 59.4%
3929241 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.51 41.0 3.46e-01 89.1% 52.7%
3819477 109.4.1.2316 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26751 0.51 40.0 2.89e-01 91.3% 27.4%
D2 medium residues 93-146
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.66 46.0 3.97e-01 88.9% 45.9%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.65 49.0 4.03e-01 81.5% 89.0%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.65 49.0 3.37e-01 85.2% 38.2%
2h6oA01 2.60.40.2800 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 53.0 3.91e-01 92.6% 64.4%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 50.0 3.34e-01 88.9% 82.1%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 3.55e-01 94.4% 86.1%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 53.0 4.24e-01 98.1% 46.0%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 48.0 3.67e-01 88.9% 36.4%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 3.74e-01 85.2% 65.9%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.62 45.0 4.27e-01 81.5% 100.0%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.61 48.0 3.81e-01 90.7% 93.4%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.60 48.0 4.98e-01 100.0% 96.0%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 47.0 3.94e-01 87.0% 54.3%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.68e-01 88.9% 39.7%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.60 50.0 3.66e-01 98.1% 85.3%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 43.0 4.07e-01 81.5% 64.6%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 46.0 3.68e-01 87.0% 79.6%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 40.0 3.38e-01 74.1% 62.7%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 40.0 3.38e-01 72.2% 49.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.61e-01 85.2% 68.8%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 50.0 4.00e-01 98.1% 72.1%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 48.0 3.93e-01 92.6% 68.9%
2yvlA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 43.0 4.23e-01 81.5% 89.7%
1zunB03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 43.0 3.56e-01 83.3% 68.9%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.40e-01 81.5% 95.7%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.17e-01 81.5% 79.3%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 3.72e-01 85.2% 67.0%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.20e-01 96.3% 64.9%
4dbhA02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.56 48.0 3.21e-01 98.1% 66.4%
2yn3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.39e-01 96.3% 52.1%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.54 37.0 3.27e-01 87.0% 46.5%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.41e-01 100.0% 57.7%
1nepA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.02e-01 79.6% 96.2%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.30e-01 90.7% 78.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.23e-01 81.5% 43.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.53 43.0 4.24e-01 92.6% 93.0%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.04e-01 92.6% 60.1%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.53 38.0 3.27e-01 92.6% 45.7%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.16e-01 87.0% 99.2%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 37.0 3.45e-01 79.6% 100.0%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 36.0 3.08e-01 77.8% 57.0%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 42.0 3.09e-01 100.0% 53.3%
3lqmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.35e-01 96.3% 52.2%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.35e-01 98.1% 61.3%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 41.0 3.23e-01 100.0% 68.4%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.56e-01 92.6% 57.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942089 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.70 60.0 3.85e-01 96.3% 81.9%
3570978 4.2.1.3 beta barrels › SH3 › SAND › SAND › RAMA 0.68 50.0 4.35e-01 83.3% 72.2%
3971219 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.67 57.0 3.68e-01 96.3% 83.2%
5009412 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.65 57.0 3.63e-01 98.1% 82.3%
4620172 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.64 54.0 3.43e-01 98.1% 85.9%
3217266 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.62 43.0 3.92e-01 74.1% 84.0%
3598857 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 46.0 3.57e-01 81.5% 61.7%
5009595 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.61 54.0 3.43e-01 98.1% 83.1%
1606334 4.10.1.0 beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.61 45.0 4.24e-01 83.3% 98.6%
4946925 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 46.0 4.15e-01 81.5% 62.7%
5060627 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.60 45.0 3.62e-01 81.5% 71.4%
4409482 3158.1.1.2 beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 0.59 43.0 3.96e-01 90.7% 58.7%
2770740 4012.3.1.3 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI2 0.58 48.0 4.65e-01 92.6% 95.0%
3714344 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 2.88e-01 96.3% 20.0%
3223271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.05e-01 98.1% 57.6%
5040738 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.58 42.0 4.12e-01 81.5% 96.7%
5032782 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.58 41.0 3.54e-01 77.8% 95.6%
3890165 219.1.1.24 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.57 46.0 3.22e-01 100.0% 82.3%
3963774 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.56 42.0 3.46e-01 83.3% 70.5%
3578824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 46.0 3.93e-01 100.0% 55.6%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.34e-01 81.5% 88.0%
3481669 284.1.1.5 a+b two layers › FKBP-like › FKBP-like › FKBP-like › Gcd10p 0.56 41.0 3.17e-01 81.5% 95.4%
5009312 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.59e-01 92.6% 64.5%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.54 38.0 3.77e-01 77.8% 71.7%
4542774 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.53 43.0 3.42e-01 100.0% 43.3%
4299173 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.52 42.0 2.71e-01 98.1% 55.2%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.52 45.0 3.70e-01 100.0% 92.4%
2841943 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 39.0 2.93e-01 83.3% 40.1%
3226306 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 3.47e-01 100.0% 83.5%
3980299 327.6.1.6 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Secretin 0.52 39.0 2.73e-01 90.7% 98.3%
4956150 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 42.0 4.21e-01 100.0% 92.7%
3935677 11.1.1.667 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.51 41.0 3.55e-01 90.7% 76.5%
3994715 11.1.1.430 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.50 37.0 3.21e-01 81.5% 52.2%
3603127 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.50 40.0 3.47e-01 90.7% 68.9%
5030549 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.50 38.0 3.86e-01 98.1% 92.7%
3981575 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.82e-01 88.9% 92.7%
3740599 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 42.0 3.18e-01 100.0% 37.2%
3608432 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 38.0 2.75e-01 90.7% 69.2%
3877786 221.1.1.67 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Plexin_RBD 0.50 39.0 3.12e-01 100.0% 40.0%