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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00377
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00377
Identity
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-79
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ntvA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 45.0 | 3.15e-01 | 98.6% | 23.8% |
| 4c9yA00 | 1.10.10.1890 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like | 0.62 | 47.0 | 3.90e-01 | 81.2% | 97.6% |
| 2fd6U02 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.59 | 34.0 | 3.19e-01 | 100.0% | 45.3% |
| 8k1fC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 2.96e-01 | 75.4% | 31.6% |
| 1wv3A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 50.0 | 4.92e-01 | 100.0% | 97.4% |
| 5dx9A01 | 3.30.70.1020 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 | 0.56 | 39.0 | 3.88e-01 | 73.9% | 70.8% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 39.0 | 3.11e-01 | 73.9% | 60.9% |
| 3va7A05 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 43.0 | 3.92e-01 | 91.3% | 95.0% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.52 | 35.0 | 3.16e-01 | 71.0% | 93.1% |
| 2l9dA00 | 3.30.70.2340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 | 0.51 | 36.0 | 3.10e-01 | 73.9% | 55.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033418 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.65 | 42.0 | 4.23e-01 | 73.9% | 65.7% |
| 5070538 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.63 | 42.0 | 4.23e-01 | 73.9% | 67.1% |
| 5049203 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.62 | 54.0 | 4.86e-01 | 100.0% | 97.0% |
| 3271101 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.62 | 44.0 | 4.19e-01 | 73.9% | 68.8% |
| 4953585 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.62 | 44.0 | 4.27e-01 | 73.9% | 68.0% |
| 5070684 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 54.0 | 3.86e-01 | 100.0% | 76.5% |
| 5044879 | 3268.1.1.0 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase | 0.59 | 51.0 | 4.83e-01 | 100.0% | 95.3% |
| 4965147 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.57 | 44.0 | 3.13e-01 | 85.5% | 88.1% |
| 3289139 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.56 | 51.0 | 4.29e-01 | 100.0% | 82.6% |
| 3937731 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.55 | 48.0 | 4.15e-01 | 100.0% | 91.8% |
| 3691787 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 40.0 | 3.15e-01 | 78.3% | 40.0% |
| 5033602 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.55 | 44.0 | 3.83e-01 | 87.0% | 83.8% |
| 3681356 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.55 | 45.0 | 3.21e-01 | 89.9% | 87.0% |
| 5044164 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.54 | 45.0 | 3.49e-01 | 98.6% | 58.8% |
| 3688090 | 306.6.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D | 0.54 | 42.0 | 3.85e-01 | 85.5% | 100.0% |
| 3496070 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.53 | 47.0 | 2.64e-01 | 100.0% | 70.4% |
| 3696503 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 2.79e-01 | 89.9% | 19.7% |
| 5051424 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.53 | 45.0 | 4.05e-01 | 94.2% | 83.2% |
| 5002573 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.52 | 47.0 | 3.56e-01 | 100.0% | 56.4% |
| 4025389 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 3.03e-01 | 78.3% | 39.3% |
| 3608098 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.52 | 43.0 | 2.81e-01 | 92.8% | 49.5% |
| 3489258 | 306.8.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like | 0.51 | 41.0 | 3.58e-01 | 87.0% | 93.3% |
| 3490639 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.51 | 44.0 | 3.66e-01 | 100.0% | 95.4% |
| 4008179 | 205.1.1.50 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_7, Fer4_11 | 0.51 | 36.0 | 2.60e-01 | 73.9% | 86.3% |
| 5027070 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.50 | 38.0 | 2.69e-01 | 79.7% | 49.0% |