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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00380

Bact-Vir

PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00380

Identity

Kingdom:
phage

Quality

92.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-76
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.77 65.0 6.02e-01 100.0% 72.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 60.0 5.84e-01 83.6% 92.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 5.82e-01 85.2% 96.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 58.0 6.11e-01 95.1% 96.3%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.71 57.0 4.79e-01 88.5% 71.2%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 53.0 4.49e-01 83.6% 65.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 57.0 5.36e-01 90.2% 91.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.14e-01 88.5% 78.5%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 4.19e-01 80.3% 54.1%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 43.0 4.00e-01 75.4% 50.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 4.13e-01 78.7% 92.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.14e-01 88.5% 79.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.65e-01 82.0% 77.3%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 49.0 4.44e-01 85.2% 96.7%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 46.0 4.09e-01 77.0% 90.2%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.64 47.0 4.53e-01 78.7% 79.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 3.88e-01 91.8% 41.1%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.13e-01 85.2% 90.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.56e-01 77.0% 79.4%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 49.0 4.40e-01 90.2% 74.2%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.63 54.0 5.09e-01 98.4% 93.4%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 41.0 3.62e-01 70.5% 56.4%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 42.0 3.76e-01 72.1% 91.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.00e-01 85.2% 94.9%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.53e-01 91.8% 86.3%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.43e-01 77.0% 93.8%
3v5qB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 42.0 3.77e-01 75.4% 87.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 3.39e-01 77.0% 86.7%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 43.0 2.74e-01 78.7% 28.8%
3m4uB00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 41.0 2.69e-01 75.4% 29.0%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 39.0 2.62e-01 72.1% 42.8%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.78e-01 73.8% 77.3%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 47.0 3.46e-01 96.7% 69.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 47.0 4.79e-01 96.7% 98.3%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 41.0 2.72e-01 82.0% 66.0%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.56 40.0 3.44e-01 78.7% 75.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.53e-01 88.5% 78.5%
4a27A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 42.0 3.24e-01 85.2% 61.4%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 40.0 2.58e-01 80.3% 31.0%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.24e-01 77.0% 80.8%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 39.0 3.10e-01 77.0% 51.1%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.55 37.0 3.15e-01 73.8% 85.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.12e-01 77.0% 79.5%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.93e-01 80.3% 89.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 3.83e-01 72.1% 73.3%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.74e-01 93.4% 78.4%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 37.0 2.91e-01 75.4% 77.8%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 38.0 2.53e-01 75.4% 36.5%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 40.0 3.32e-01 85.2% 77.2%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.76e-01 95.1% 90.3%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 37.0 3.05e-01 75.4% 68.5%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 35.0 2.88e-01 70.5% 36.0%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.49e-01 88.5% 93.9%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.94e-01 78.7% 56.7%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.50 37.0 3.22e-01 85.2% 91.9%
3q2wA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 34.0 2.94e-01 70.5% 73.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213653 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 59.0 5.38e-01 80.3% 92.5%
3546727 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 62.0 5.05e-01 85.2% 63.9%
3259841 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.04e-01 86.9% 94.3%
4123449 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.76 56.0 4.95e-01 77.0% 72.9%
3884131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 66.0 5.38e-01 100.0% 62.6%
3557677 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 63.0 6.03e-01 91.8% 94.3%
4615629 4.1.1.449 beta barrels › SH3 › SH3 › SH3 › DUF1292 0.73 53.0 4.75e-01 77.0% 76.5%
3214131 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 65.0 5.89e-01 100.0% 86.3%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.76e-01 86.9% 94.8%
3594029 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 50.0 4.18e-01 77.0% 84.8%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 52.0 5.29e-01 82.0% 95.0%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.15e-01 80.3% 90.9%
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.67 53.0 5.45e-01 95.1% 91.4%
5020511 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.67 48.0 3.86e-01 75.4% 44.3%
3734800 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.65 47.0 2.79e-01 77.0% 18.5%
3599882 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 46.0 2.71e-01 73.8% 26.4%
3937661 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 46.0 4.58e-01 77.0% 81.5%
3207081 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 45.0 4.50e-01 78.7% 92.3%
3513195 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 44.0 3.83e-01 77.0% 85.0%
3212496 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 41.0 3.68e-01 72.1% 91.1%
5068089 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.60 40.0 3.37e-01 70.5% 93.0%
3387331 211.1.1.7 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_4 0.60 40.0 3.16e-01 70.5% 33.1%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.59 46.0 4.32e-01 85.2% 81.3%
3726361 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 42.0 3.77e-01 75.4% 66.7%
3773011 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 45.0 2.98e-01 88.5% 71.3%
5055003 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 40.0 3.44e-01 72.1% 76.0%
5018480 1104.1.1.0 a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain 0.58 45.0 3.25e-01 85.2% 60.6%
3940554 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.58 40.0 2.63e-01 73.8% 45.2%
4023011 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.58 45.0 3.17e-01 90.2% 48.9%
3935939 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 41.0 2.59e-01 75.4% 25.0%
3926869 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 38.0 2.48e-01 70.5% 35.5%
3224838 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 41.0 2.58e-01 75.4% 23.9%
3443588 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.57 43.0 3.01e-01 83.6% 60.5%
4016724 7026.1.1.0 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.56 41.0 2.71e-01 78.7% 39.3%
3934995 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 40.0 2.77e-01 75.4% 34.3%
3619246 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 39.0 3.37e-01 75.4% 62.9%
3741704 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 39.0 3.14e-01 73.8% 84.6%
3510139 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 42.0 3.04e-01 83.6% 51.8%
3438132 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 38.0 3.27e-01 72.1% 61.9%
3541127 2.1.1.170 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 0.56 41.0 3.91e-01 82.0% 76.0%
3937102 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 40.0 2.92e-01 77.0% 52.2%
3636285 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.55 38.0 3.78e-01 73.8% 73.8%
3439646 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.55 37.0 3.17e-01 70.5% 61.0%
3626321 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 41.0 4.25e-01 83.6% 96.4%
4483150 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.55 43.0 3.24e-01 88.5% 66.9%
2987310 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 38.0 3.25e-01 75.4% 52.8%
3342794 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 38.0 3.44e-01 75.4% 67.8%
3959610 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 44.0 3.52e-01 93.4% 84.2%
3256260 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 41.0 3.58e-01 88.5% 94.3%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 37.0 2.92e-01 72.1% 82.2%
2803903 2007.2.3.21 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK 0.54 38.0 2.54e-01 77.0% 41.3%
2516764 71.1.1.4 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › MucB_RseB 0.54 41.0 3.00e-01 85.2% 76.1%
4004698 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.54 40.0 3.79e-01 82.0% 77.3%
3628522 5.1.4.489 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.53 45.0 2.54e-01 96.7% 49.3%
3927077 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 37.0 2.49e-01 75.4% 28.8%
3368394 4325.1.1.11 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.53 38.0 3.35e-01 78.7% 77.9%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 39.0 3.42e-01 82.0% 60.0%
4010300 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.52 35.0 3.23e-01 72.1% 95.3%
3246370 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 38.0 2.46e-01 83.6% 32.9%
3658323 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.51 36.0 3.11e-01 77.0% 58.1%
396 2.2.1.8 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox 0.51 38.0 3.45e-01 90.2% 98.0%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.51 38.0 3.82e-01 88.5% 100.0%
3695678 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.51 40.0 2.52e-01 96.7% 21.1%