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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00451
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00451
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-119
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.70 | 55.0 | 4.34e-01 | 82.8% | 81.8% |
| 1wp1B01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.69 | 50.0 | 3.33e-01 | 76.3% | 75.9% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.65 | 47.0 | 4.32e-01 | 74.2% | 100.0% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.62 | 42.0 | 4.11e-01 | 71.0% | 89.5% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 44.0 | 3.09e-01 | 75.3% | 31.6% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.61 | 42.0 | 4.03e-01 | 71.0% | 80.0% |
| 1ybxA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.60 | 40.0 | 4.08e-01 | 72.0% | 70.3% |
| 4iusA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 44.0 | 3.19e-01 | 78.5% | 58.0% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.59 | 40.0 | 3.91e-01 | 71.0% | 86.8% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 44.0 | 4.31e-01 | 80.6% | 88.3% |
| 3spcA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 3.77e-01 | 75.3% | 70.9% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 41.0 | 4.17e-01 | 76.3% | 81.1% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.57 | 39.0 | 3.20e-01 | 72.0% | 91.9% |
| 3gd0A02 | 3.30.920.50 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain | 0.57 | 39.0 | 3.74e-01 | 72.0% | 84.8% |
| 4p1eA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.56 | 47.0 | 3.24e-01 | 90.3% | 88.2% |
| 1fc4A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 39.0 | 3.44e-01 | 72.0% | 66.2% |
| 3k1hA00 | 3.30.1120.180 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 | 0.55 | 41.0 | 3.83e-01 | 78.5% | 78.3% |
| 3cq4A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 38.0 | 3.49e-01 | 73.1% | 64.1% |
| 3kkiA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 38.0 | 3.22e-01 | 71.0% | 57.8% |
| 7bvaA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 38.0 | 2.88e-01 | 74.2% | 86.3% |
| 2fhzA00 | 3.30.190.30 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › | 0.53 | 34.0 | 3.26e-01 | 78.5% | 56.6% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 40.0 | 2.99e-01 | 79.6% | 60.2% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 36.0 | 3.17e-01 | 72.0% | 58.4% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 40.0 | 3.10e-01 | 78.5% | 46.8% |
| 2eo5A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 36.0 | 3.15e-01 | 72.0% | 57.4% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 36.0 | 3.01e-01 | 73.1% | 56.8% |
| 2kouA00 | 3.30.160.380 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Dicer dimerisation domain | 0.50 | 36.0 | 3.54e-01 | 76.3% | 88.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4213489 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.71 | 42.0 | 4.18e-01 | 76.3% | 57.9% |
| 4498285 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.71 | 41.0 | 4.12e-01 | 77.4% | 56.8% |
| 4067567 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.70 | 41.0 | 4.12e-01 | 77.4% | 57.9% |
| 5017022 | 331.1.1.27 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS | 0.69 | 46.0 | 3.23e-01 | 72.0% | 22.5% |
| 3786078 | 109.4.1.1764 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 | 0.69 | 48.0 | 3.00e-01 | 72.0% | 32.9% |
| 3876027 | 220.1.1.13 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 | 0.67 | 40.0 | 3.39e-01 | 71.0% | 36.7% |
| 4966262 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.66 | 43.0 | 4.95e-01 | 71.0% | 96.9% |
| 4952130 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.65 | 49.0 | 3.55e-01 | 78.5% | 39.6% |
| 4978506 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.64 | 49.0 | 3.80e-01 | 79.6% | 47.4% |
| 5052370 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 31.0 | 2.91e-01 | 74.2% | 39.1% |
| 5012208 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.64 | 46.0 | 4.70e-01 | 75.3% | 92.2% |
| 4976626 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.64 | 48.0 | 3.57e-01 | 79.6% | 40.0% |
| 3743045 | 3409.1.1.0 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain | 0.63 | 47.0 | 4.13e-01 | 79.6% | 61.4% |
| 3895743 | 3615.1.1.7 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 | 0.63 | 57.0 | 4.51e-01 | 100.0% | 62.1% |
| 5051764 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.63 | 46.0 | 3.85e-01 | 76.3% | 86.5% |
| 4669316 | 3439.1.1.0 ↗ | a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain | 0.62 | 42.0 | 4.75e-01 | 73.1% | 98.5% |
| 3478959 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.62 | 53.0 | 4.18e-01 | 92.5% | 72.1% |
| 3263507 | 3409.1.1.3 ↗ | a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › ATG14 | 0.62 | 49.0 | 4.16e-01 | 84.9% | 72.0% |
| 4929825 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 32.0 | 2.90e-01 | 76.3% | 39.5% |
| 3591940 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.61 | 48.0 | 3.80e-01 | 84.9% | 75.3% |
| 4139864 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.60 | 45.0 | 4.43e-01 | 79.6% | 73.5% |
| 3729944 | 4099.1.1.10 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 | 0.59 | 42.0 | 3.97e-01 | 73.1% | 97.3% |
| 4978622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 33.0 | 3.29e-01 | 78.5% | 54.0% |
| 4429302 | 4161.1.1.0 ↗ | beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like | 0.57 | 41.0 | 2.90e-01 | 76.3% | 67.2% |
| 4960551 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 34.0 | 2.98e-01 | 76.3% | 40.7% |
| 3629452 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.55 | 45.0 | 3.55e-01 | 86.0% | 66.5% |
| 3295705 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 34.0 | 3.08e-01 | 71.0% | 44.4% |
| 3277723 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.54 | 38.0 | 2.86e-01 | 74.2% | 82.9% |
| 4274345 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.53 | 38.0 | 2.88e-01 | 74.2% | 83.1% |
| 3789412 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 41.0 | 2.54e-01 | 82.8% | 49.0% |
| 3989430 | 3755.3.1.127 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N | 0.52 | 46.0 | 4.02e-01 | 95.7% | 74.3% |
| 5075279 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 31.0 | 2.94e-01 | 75.3% | 48.7% |
| 3972594 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.50 | 39.0 | 2.90e-01 | 83.9% | 45.9% |
| 4645961 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.50 | 41.0 | 3.24e-01 | 87.1% | 59.5% |