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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00454
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00454
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-74
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00171__D21-85
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.73 | 50.0 | 4.85e-01 | 72.1% | 84.2% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.68 | 46.0 | 5.16e-01 | 72.1% | 96.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 41.0 | 4.25e-01 | 100.0% | 82.0% |
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 39.0 | 3.41e-01 | 98.5% | 46.2% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.56 | 42.0 | 2.91e-01 | 82.4% | 56.0% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 48.0 | 3.19e-01 | 100.0% | 48.8% |
| 3zt9A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 46.0 | 3.42e-01 | 98.5% | 56.2% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 42.0 | 4.10e-01 | 91.2% | 96.2% |
| 2knrA00 | 3.40.1530.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) | 0.54 | 36.0 | 3.14e-01 | 72.1% | 73.7% |
| 4d05A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 40.0 | 3.93e-01 | 100.0% | 76.3% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.53 | 37.0 | 2.57e-01 | 73.5% | 41.0% |
| 1fviA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 42.0 | 4.04e-01 | 98.5% | 77.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 46.0 | 3.51e-01 | 100.0% | 94.0% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.90e-01 | 100.0% | 67.9% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.53 | 38.0 | 3.87e-01 | 100.0% | 79.1% |
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.52 | 45.0 | 2.61e-01 | 97.1% | 89.7% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 37.0 | 3.23e-01 | 80.9% | 86.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 44.0 | 4.03e-01 | 100.0% | 96.7% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 35.0 | 2.69e-01 | 73.5% | 73.4% |
| 1x9nA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 38.0 | 3.68e-01 | 98.5% | 70.2% |
| 4kx7A03 | 2.60.40.1910 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 34.0 | 3.26e-01 | 100.0% | 57.1% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.50 | 38.0 | 3.64e-01 | 100.0% | 69.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3288892 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.72 | 47.0 | 5.44e-01 | 85.3% | 100.0% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.68 | 50.0 | 4.99e-01 | 77.9% | 100.0% |
| 4340143 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 43.0 | 4.31e-01 | 82.4% | 66.7% |
| 5070656 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.65 | 48.0 | 4.55e-01 | 80.9% | 68.2% |
| 4166447 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.65 | 48.0 | 4.31e-01 | 79.4% | 81.1% |
| 3931734 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.64 | 39.0 | 3.59e-01 | 97.1% | 46.7% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.64 | 43.0 | 4.83e-01 | 75.0% | 100.0% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 44.0 | 4.30e-01 | 75.0% | 98.7% |
| 3554291 | 382.1.1.16 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 | 0.62 | 46.0 | 4.35e-01 | 80.9% | 88.0% |
| 3404175 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 39.0 | 4.18e-01 | 83.8% | 78.2% |
| 5066749 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.59 | 50.0 | 3.51e-01 | 100.0% | 74.3% |
| 3935405 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 42.0 | 3.83e-01 | 77.9% | 74.4% |
| 3217685 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.57 | 39.0 | 4.13e-01 | 100.0% | 86.2% |
| 4410550 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.56 | 35.0 | 3.83e-01 | 76.5% | 84.0% |
| 3405249 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.56 | 35.0 | 3.75e-01 | 77.9% | 79.2% |
| 3186772 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.53 | 44.0 | 3.17e-01 | 89.7% | 46.8% |
| 4461643 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.53 | 35.0 | 3.65e-01 | 76.5% | 78.3% |
| 3240522 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.52 | 46.0 | 3.33e-01 | 100.0% | 46.0% |
| 3405674 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.51 | 32.0 | 3.48e-01 | 86.8% | 78.2% |
| 3295690 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.51 | 37.0 | 3.83e-01 | 100.0% | 86.2% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.51 | 44.0 | 3.22e-01 | 100.0% | 37.5% |