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PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00463
Bact-VirPH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00463
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 11-55
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 54.0 | 4.10e-01 | 84.4% | 100.0% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.69 | 47.0 | 4.25e-01 | 73.3% | 76.6% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 45.0 | 4.10e-01 | 75.6% | 59.7% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 57.0 | 3.65e-01 | 100.0% | 91.4% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.65 | 47.0 | 2.86e-01 | 75.6% | 79.8% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.63 | 44.0 | 3.55e-01 | 75.6% | 84.5% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 44.0 | 4.02e-01 | 77.8% | 61.2% |
| 1goiA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.60 | 43.0 | 3.57e-01 | 77.8% | 100.0% |
| 3we0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 48.0 | 3.10e-01 | 97.8% | 82.6% |
| 2v05A02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.60 | 41.0 | 2.82e-01 | 71.1% | 58.6% |
| 1aisA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 40.0 | 3.29e-01 | 71.1% | 62.1% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 3.88e-01 | 75.6% | 65.5% |
| 2mp1A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 42.0 | 3.66e-01 | 75.6% | 55.8% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 42.0 | 3.66e-01 | 75.6% | 100.0% |
| 3o46A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 42.0 | 3.55e-01 | 80.0% | 95.2% |
| 3jyyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 44.0 | 3.37e-01 | 95.6% | 76.1% |
| 6y48D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 2.83e-01 | 95.6% | 67.1% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 41.0 | 3.21e-01 | 86.7% | 33.1% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 38.0 | 2.40e-01 | 75.6% | 12.2% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 40.0 | 3.20e-01 | 80.0% | 60.2% |
| 1hxdA03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.89e-01 | 77.8% | 81.4% |
| 1w9pA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 38.0 | 3.55e-01 | 75.6% | 63.5% |
| 5dezA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 39.0 | 3.49e-01 | 80.0% | 98.6% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.54 | 37.0 | 3.00e-01 | 71.1% | 51.5% |
| 4a53A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 3.55e-01 | 75.6% | 61.3% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 36.0 | 2.22e-01 | 73.3% | 13.5% |
| 3luuA00 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.54 | 38.0 | 3.22e-01 | 80.0% | 66.3% |
| 3nkdA01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.54 | 44.0 | 3.66e-01 | 91.1% | 44.0% |
| 3h37A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 41.0 | 2.99e-01 | 91.1% | 49.7% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 37.0 | 3.69e-01 | 75.6% | 72.3% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.52 | 38.0 | 2.80e-01 | 88.9% | 29.4% |
| 4csqA00 | 2.30.29.190 | Mainly Beta › Roll › PH-domain like › | 0.52 | 37.0 | 3.03e-01 | 86.7% | 77.9% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.23e-01 | 75.6% | 85.1% |
| 3go5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 36.0 | 3.25e-01 | 75.6% | 87.1% |
| 1xhhA00 | 2.60.40.1900 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain | 0.52 | 40.0 | 3.22e-01 | 71.1% | 38.5% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 38.0 | 3.35e-01 | 84.4% | 54.8% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 35.0 | 2.38e-01 | 75.6% | 70.9% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.50 | 35.0 | 2.08e-01 | 75.6% | 9.4% |
| 1ep5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 34.0 | 2.88e-01 | 71.1% | 87.2% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4002724 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.70 | 53.0 | 3.17e-01 | 86.7% | 58.4% |
| 3702974 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.68 | 48.0 | 4.60e-01 | 75.6% | 74.1% |
| 3777158 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.67 | 51.0 | 2.98e-01 | 82.2% | 69.7% |
| 3714230 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.67 | 48.0 | 4.24e-01 | 75.6% | 58.0% |
| 1826876 | 702.1.1.3 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 | 0.66 | 44.0 | 2.86e-01 | 71.1% | 30.6% |
| 3417954 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.66 | 47.0 | 3.41e-01 | 75.6% | 46.7% |
| 3259156 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.64 | 47.0 | 3.56e-01 | 86.7% | 57.7% |
| 1179510 | 719.2.1.2 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › DUF2442 | 0.63 | 43.0 | 3.58e-01 | 73.3% | 97.7% |
| 3556735 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.63 | 44.0 | 3.86e-01 | 75.6% | 53.4% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.63 | 54.0 | 3.19e-01 | 100.0% | 95.8% |
| 4147290 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.63 | 43.0 | 3.92e-01 | 73.3% | 52.3% |
| 4635782 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.62 | 45.0 | 3.54e-01 | 80.0% | 66.3% |
| 5003618 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.62 | 43.0 | 4.39e-01 | 75.6% | 77.8% |
| 3276003 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.62 | 46.0 | 3.06e-01 | 86.7% | 46.4% |
| 4327595 | 4.1.1.402 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2761 | 0.62 | 42.0 | 3.45e-01 | 73.3% | 83.2% |
| 3842985 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.61 | 51.0 | 3.31e-01 | 91.1% | 50.9% |
| 3183315 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.61 | 49.0 | 3.09e-01 | 97.8% | 71.5% |
| 4982561 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.61 | 43.0 | 4.36e-01 | 75.6% | 75.6% |
| 5063311 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.61 | 42.0 | 4.26e-01 | 75.6% | 82.2% |
| 3635145 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.61 | 46.0 | 2.74e-01 | 86.7% | 18.6% |
| None | — | 0.60 | 47.0 | 3.01e-01 | 97.8% | 65.8% | |
| 3683580 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.60 | 48.0 | 3.10e-01 | 100.0% | 71.3% |
| 4500972 | 4167.1.1.1 ↗ | beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 | 0.60 | 42.0 | 2.97e-01 | 75.6% | 32.3% |
| 4998113 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.60 | 42.0 | 4.21e-01 | 77.8% | 82.2% |
| 3979842 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.59 | 41.0 | 3.92e-01 | 75.6% | 69.1% |
| 4985100 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 42.0 | 4.16e-01 | 75.6% | 68.0% |
| 3343842 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.59 | 48.0 | 2.86e-01 | 100.0% | 95.0% |
| 3242411 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.59 | 42.0 | 3.38e-01 | 84.4% | 72.7% |
| 4951012 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.58 | 42.0 | 4.16e-01 | 75.6% | 68.0% |
| 5035177 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.58 | 42.0 | 4.05e-01 | 75.6% | 63.0% |
| 3694130 | 4317.1.1.0 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like | 0.58 | 39.0 | 3.77e-01 | 71.1% | 92.7% |
| 3176896 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.58 | 41.0 | 3.13e-01 | 80.0% | 59.2% |
| 4957377 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.58 | 42.0 | 3.82e-01 | 75.6% | 54.0% |
| 4647213 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.57 | 39.0 | 4.06e-01 | 75.6% | 85.0% |
| 5038405 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 39.0 | 3.93e-01 | 71.1% | 71.1% |
| 3401459 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.57 | 42.0 | 3.28e-01 | 84.4% | 53.6% |
| 4953223 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.56 | 39.0 | 3.87e-01 | 77.8% | 72.0% |
| 3971397 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.56 | 39.0 | 3.18e-01 | 75.6% | 55.9% |
| 3740511 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.56 | 38.0 | 3.14e-01 | 71.1% | 36.7% |
| 3177048 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.55 | 38.0 | 3.18e-01 | 77.8% | 65.3% |
| 3473109 | 220.1.1.247 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_34 | 0.55 | 40.0 | 3.78e-01 | 84.4% | 65.0% |
| 4144845 | 220.1.1.289 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB | 0.54 | 43.0 | 3.35e-01 | 93.3% | 80.0% |
| 4880433 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 37.0 | 3.28e-01 | 73.3% | 61.4% |
| 3277860 | 4.1.1.368 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3097_N | 0.53 | 39.0 | 3.66e-01 | 88.9% | 84.6% |
| 3969569 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 37.0 | 3.54e-01 | 82.2% | 100.0% |
| 1824581 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.53 | 42.0 | 2.97e-01 | 93.3% | 50.9% |
| 4211209 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 38.0 | 3.53e-01 | 84.4% | 93.8% |
| 2561577 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.53 | 37.0 | 3.41e-01 | 75.6% | 55.7% |
| 3740570 | 2.1.1.120 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C | 0.52 | 38.0 | 3.04e-01 | 80.0% | 65.3% |
| 3968342 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.51 | 35.0 | 3.50e-01 | 80.0% | 75.5% |
D2
medium
residues 58-104
Domain cluster:
representative