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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00035
Bact-VirPHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00035
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-86
Domain cluster:
rep: NC_052660.1__YP_009986652.1__JR325_gp173__00276__D78-150
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6dxwA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.59 | 41.0 | 2.84e-01 | 74.6% | 96.1% |
| 6qm7K00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 41.0 | 2.94e-01 | 77.8% | 94.7% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 42.0 | 3.10e-01 | 84.1% | 93.4% |
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 41.0 | 3.40e-01 | 100.0% | 42.9% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.54 | 35.0 | 2.78e-01 | 79.4% | 32.6% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 39.0 | 2.92e-01 | 81.0% | 72.3% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 43.0 | 3.14e-01 | 95.2% | 95.5% |
| 1dtdB00 | 3.30.1040.10 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › Carboxypeptidase inhibitor | 0.52 | 37.0 | 3.80e-01 | 77.8% | 100.0% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 44.0 | 4.30e-01 | 96.8% | 85.3% |
| 5fmgG00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 39.0 | 2.85e-01 | 88.9% | 82.2% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 44.0 | 4.14e-01 | 96.8% | 80.5% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 43.0 | 4.07e-01 | 96.8% | 78.7% |
| 1g0uE00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 42.0 | 2.94e-01 | 98.4% | 84.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026029 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.61 | 33.0 | 2.64e-01 | 74.6% | 24.6% |
| 3553702 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.56 | 41.0 | 3.61e-01 | 76.2% | 90.0% |
| 3853779 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.56 | 41.0 | 3.07e-01 | 77.8% | 52.9% |
| 3268620 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.44e-01 | 81.0% | 98.2% |
| 3574882 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 41.0 | 3.29e-01 | 85.7% | 84.1% |
| 3822463 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 39.0 | 3.60e-01 | 76.2% | 98.8% |
| 3496494 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 39.0 | 2.46e-01 | 95.2% | 14.1% |
| 3427031 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 40.0 | 3.18e-01 | 81.0% | 65.6% |
| 8596 | 905.1.1.0 ↗ | few secondary structure elements › Carboxypeptidase inhibitor › Carboxypeptidase inhibitor › Carboxypeptidase inhibitor | 0.52 | 37.0 | 3.80e-01 | 77.8% | 100.0% |
| 4177906 | 5.2.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C | 0.52 | 41.0 | 2.68e-01 | 88.9% | 99.4% |