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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00088
Bact-VirPHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00088
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-127
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 35.0 | 3.88e-01 | 76.5% | 78.5% |
| 3mx3A01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 40.0 | 3.04e-01 | 74.1% | 75.3% |
| 2ys8A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.54 | 32.0 | 3.16e-01 | 82.4% | 54.4% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.78e-01 | 77.6% | 90.2% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.53 | 38.0 | 3.41e-01 | 76.5% | 87.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4230646 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 4.05e-01 | 75.3% | 96.5% |
| 3615228 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.52 | 37.0 | 3.51e-01 | 76.5% | 83.8% |
| 3741532 | 181.1.1.14 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ISN1 | 0.52 | 40.0 | 3.75e-01 | 97.6% | 67.3% |
D2
medium
residues 147-272
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00649__D23-135
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.82 | 60.0 | 5.69e-01 | 92.1% | 64.4% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.78 | 55.0 | 5.25e-01 | 89.7% | 61.9% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.75 | 57.0 | 5.22e-01 | 91.3% | 61.9% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.75 | 59.0 | 5.48e-01 | 92.1% | 66.7% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.74 | 60.0 | 5.42e-01 | 91.3% | 65.4% |
| 3lkxB00 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.71 | 31.0 | 4.46e-01 | 70.6% | 92.6% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.61 | 47.0 | 3.76e-01 | 81.0% | 44.3% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 3.80e-01 | 84.1% | 73.7% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.59 | 34.0 | 3.80e-01 | 82.5% | 72.9% |
| 3dmbA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 41.0 | 3.93e-01 | 83.3% | 62.3% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 32.0 | 3.65e-01 | 81.7% | 71.3% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 32.0 | 3.47e-01 | 78.6% | 63.5% |
| 2pb7A01 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.57 | 47.0 | 4.19e-01 | 88.1% | 74.0% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 27.0 | 3.46e-01 | 80.2% | 76.7% |
| 2yq1C00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.56 | 30.0 | 2.99e-01 | 81.7% | 46.6% |
| 6r2wH02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 33.0 | 3.53e-01 | 79.4% | 67.3% |
| 3dfjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 32.0 | 3.40e-01 | 79.4% | 65.5% |
| 4fvdA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 27.0 | 3.15e-01 | 80.2% | 64.9% |
| 1fiwA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 34.0 | 3.47e-01 | 79.4% | 65.8% |
| 5fcrC02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 32.0 | 3.45e-01 | 79.4% | 69.2% |
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 32.0 | 3.44e-01 | 82.5% | 69.9% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 31.0 | 3.60e-01 | 82.5% | 80.0% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 28.0 | 3.06e-01 | 77.0% | 61.4% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.95e-01 | 86.5% | 75.6% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 32.0 | 3.41e-01 | 83.3% | 69.2% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 30.0 | 3.52e-01 | 79.4% | 80.7% |
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 31.0 | 3.46e-01 | 83.3% | 74.5% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 29.0 | 3.19e-01 | 81.0% | 63.5% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 29.0 | 3.22e-01 | 81.0% | 67.6% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 31.0 | 3.46e-01 | 82.5% | 78.7% |
| 2hd9A00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.51 | 38.0 | 3.71e-01 | 90.5% | 69.0% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 32.0 | 3.43e-01 | 83.3% | 72.2% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 25.0 | 2.81e-01 | 74.6% | 57.6% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 26.0 | 2.84e-01 | 79.4% | 56.7% |
| 4g7nA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 31.0 | 3.15e-01 | 91.3% | 62.8% |
| 2xriA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 35.0 | 2.95e-01 | 71.4% | 63.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.84 | 62.0 | 5.99e-01 | 90.5% | 68.3% |
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.83 | 61.0 | 5.82e-01 | 88.9% | 65.5% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.83 | 67.0 | 6.06e-01 | 86.5% | 65.0% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.82 | 62.0 | 5.84e-01 | 89.7% | 65.8% |
| 1124583 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.82 | 60.0 | 5.69e-01 | 92.1% | 64.4% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.82 | 62.0 | 5.78e-01 | 90.5% | 65.8% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.81 | 58.0 | 5.38e-01 | 90.5% | 60.0% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.81 | 62.0 | 6.16e-01 | 84.1% | 76.9% |
| 3023894 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.81 | 61.0 | 5.70e-01 | 87.3% | 65.8% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.80 | 65.0 | 5.99e-01 | 88.1% | 68.4% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.79 | 55.0 | 5.55e-01 | 88.9% | 70.9% |
| 3942477 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.79 | 62.0 | 5.67e-01 | 92.1% | 63.8% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.78 | 60.0 | 5.64e-01 | 88.9% | 66.0% |
| 2097771 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.78 | 62.0 | 5.55e-01 | 92.1% | 61.2% |
| 3966479 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.78 | 61.0 | 5.56e-01 | 92.1% | 63.0% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.76 | 52.0 | 5.50e-01 | 83.3% | 76.5% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.75 | 60.0 | 5.51e-01 | 92.9% | 65.6% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 58.0 | 4.42e-01 | 90.5% | 37.4% |
| 80 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 59.0 | 5.44e-01 | 92.1% | 65.6% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 60.0 | 5.42e-01 | 91.3% | 65.4% |
| 2074267 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 60.0 | 5.47e-01 | 91.3% | 66.9% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 61.0 | 5.59e-01 | 92.9% | 70.0% |
| 3502370 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.72 | 57.0 | 5.27e-01 | 96.0% | 65.6% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 58.0 | 5.40e-01 | 92.1% | 69.7% |
| 4954551 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 50.0 | 4.87e-01 | 85.7% | 67.4% |
| 3942828 | 1.1.13.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 | 0.68 | 52.0 | 5.03e-01 | 90.5% | 70.3% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.66 | 54.0 | 5.07e-01 | 90.5% | 70.3% |
| 5080512 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 59.0 | 4.30e-01 | 96.0% | 38.2% |
| 5040331 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.61 | 49.0 | 4.66e-01 | 88.1% | 73.1% |
| 3964728 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.56 | 32.0 | 3.64e-01 | 82.5% | 73.7% |
| 1122231 | 304.15.1.4 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › LANA1_DNA-bd | 0.56 | 30.0 | 2.99e-01 | 81.7% | 46.6% |
| 3784272 | 1.1.7.102 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 | 0.56 | 37.0 | 3.83e-01 | 82.5% | 70.8% |
| 5080510 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.55 | 33.0 | 3.62e-01 | 82.5% | 73.7% |
| 5022898 | 10.34.1.0 ↗ | beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain | 0.54 | 26.0 | 3.07e-01 | 82.5% | 62.4% |
| 3926912 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.53 | 37.0 | 3.47e-01 | 81.0% | 56.2% |
| 5050287 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.51 | 31.0 | 3.51e-01 | 86.5% | 82.2% |