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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00135

Bact-Vir

PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00135

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-133
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 33.3 5.10e-08 85.0% 78.5%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jiuA00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.77 56.0 6.28e-01 93.2% 96.2%
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.76 57.0 6.40e-01 95.5% 100.0%
3zukA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.69 59.0 4.49e-01 93.2% 68.6%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.68 55.0 5.01e-01 86.5% 96.6%
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 46.0 4.85e-01 75.9% 78.6%
3dwbA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.67 60.0 4.53e-01 97.7% 68.9%
1pwuA04 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.66 54.0 4.60e-01 88.7% 74.7%
2ejqB00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.66 54.0 5.72e-01 97.7% 100.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.65 47.0 5.09e-01 94.7% 90.0%
3e11A00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.65 51.0 5.47e-01 86.5% 97.4%
1g12A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.64 51.0 4.78e-01 87.2% 95.2%
3pt3B00 3.30.2410.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain 0.56 34.0 3.89e-01 79.7% 82.5%
2gs8A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 44.0 4.03e-01 94.7% 63.6%
3vkgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.55 48.0 4.54e-01 97.0% 83.1%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 45.0 4.58e-01 89.5% 100.0%
1cpcB00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 33.0 3.08e-01 75.2% 48.8%
6qavC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 36.0 3.31e-01 71.4% 83.7%
3k5wA02 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 40.0 3.27e-01 82.7% 85.5%
3k7dA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 37.0 3.75e-01 76.7% 77.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4458442 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.84 62.0 6.75e-01 85.7% 90.9%
4942840 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.82 61.0 6.78e-01 87.2% 96.2%
3970171 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.81 62.0 6.91e-01 91.0% 100.0%
2514242 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.80 67.0 6.90e-01 95.5% 91.4%
5055672 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.80 61.0 6.79e-01 97.0% 100.0%
3838568 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.78 59.0 6.61e-01 100.0% 100.0%
3390011 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.78 65.0 5.52e-01 93.2% 56.2%
3644314 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.78 69.0 6.89e-01 93.2% 94.8%
5053447 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.77 57.0 6.09e-01 86.5% 87.3%
4988454 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.76 56.0 6.30e-01 92.5% 100.0%
1030677 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.75 58.0 6.24e-01 97.7% 95.5%
1314423 2498.1.1.26 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M56 0.74 57.0 6.29e-01 99.2% 98.2%
4969797 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.72 58.0 6.25e-01 97.0% 98.3%
5061806 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.72 58.0 6.22e-01 97.0% 98.3%
3227601 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.71 63.0 4.02e-01 95.5% 45.0%
3398964 2498.1.1.56 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13_N 0.71 63.0 3.96e-01 96.2% 41.6%
3499171 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 63.0 4.02e-01 96.2% 38.9%
5011816 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.71 57.0 5.76e-01 85.0% 89.2%
5027859 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 58.0 5.74e-01 87.2% 94.2%
4983979 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 48.0 5.13e-01 82.0% 80.0%
3705780 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.70 60.0 4.78e-01 91.0% 63.5%
3225533 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.70 64.0 4.04e-01 98.5% 41.7%
3397826 2498.1.1.53 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13 0.69 61.0 3.97e-01 96.2% 44.0%
3600552 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 59.0 4.62e-01 91.0% 58.9%
3395622 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.69 63.0 4.00e-01 98.5% 41.9%
3405450 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.69 57.0 4.72e-01 85.7% 88.2%
5080626 2498.1.1.39 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.69 56.0 6.00e-01 96.2% 100.0%
3401188 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.69 62.0 3.96e-01 97.0% 93.5%
4015287 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 56.0 4.49e-01 85.0% 48.2%
3754841 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.69 60.0 3.85e-01 96.2% 39.2%
4929397 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 58.0 5.89e-01 91.7% 94.6%
3924409 2498.1.1.53 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13 0.69 62.0 4.65e-01 98.5% 80.9%
3877262 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.68 55.0 5.64e-01 87.2% 88.8%
4340733 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.68 61.0 4.72e-01 97.0% 61.8%
3608334 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.68 58.0 4.70e-01 91.0% 65.3%
3600526 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.68 58.0 4.69e-01 91.0% 65.3%
5031785 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.68 59.0 5.78e-01 100.0% 87.1%
3403957 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.68 60.0 3.83e-01 97.0% 90.8%
3401343 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.67 61.0 3.87e-01 98.5% 92.1%
5010190 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.67 58.0 4.97e-01 92.5% 72.2%
3521708 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.67 57.0 4.52e-01 93.2% 45.8%
4310284 2498.1.1.143 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF3318 0.67 59.0 5.08e-01 94.7% 84.5%
3405076 2498.1.1.56 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13_N 0.67 58.0 3.83e-01 97.0% 39.3%
4412026 2498.1.1.46 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aspzincin_M35 0.66 53.0 4.82e-01 84.2% 94.3%
3519421 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.66 57.0 5.23e-01 91.7% 82.9%
3386105 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.66 60.0 6.12e-01 100.0% 98.5%
3957469 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.66 60.0 5.79e-01 97.0% 92.0%
5081586 2498.1.1.10 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 57.0 4.42e-01 92.5% 59.9%
5030912 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 59.0 4.60e-01 97.0% 49.3%
5047941 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 55.0 4.81e-01 91.0% 80.5%
5027975 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 44.0 5.05e-01 78.2% 95.8%
5057884 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 57.0 5.69e-01 97.7% 91.9%
4025675 2498.1.1.62 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.65 56.0 4.95e-01 94.0% 76.4%
5028916 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.65 55.0 4.80e-01 91.0% 78.5%
5016438 2498.1.1.17 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like 0.64 60.0 5.69e-01 99.2% 94.8%
5057933 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.63 51.0 5.09e-01 91.0% 84.4%
3983196 2498.1.1.57 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › LPD1 0.63 55.0 4.52e-01 93.2% 85.5%
4959203 2498.1.1.160 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_MA_2 0.63 55.0 4.50e-01 93.2% 63.0%
4537352 2498.1.1.29 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 0.62 45.0 4.22e-01 73.7% 85.0%
3544003 2498.1.1.14 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.62 56.0 3.85e-01 99.2% 64.3%
4353357 2498.1.1.124 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF29610 0.62 53.0 4.50e-01 92.5% 62.3%
4965710 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 54.0 3.95e-01 94.7% 44.0%
5044595 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 53.0 4.79e-01 96.2% 69.4%
4072989 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.61 48.0 4.36e-01 88.7% 62.3%
4223692 2498.1.1.58 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N 0.60 53.0 4.92e-01 97.0% 77.6%
3954373 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 48.0 3.73e-01 90.2% 75.9%
3962296 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 47.0 3.91e-01 90.2% 81.3%
5029119 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 37.0 3.86e-01 74.4% 75.0%
3998505 604.9.1.2 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Strabismus 0.53 29.0 3.09e-01 72.9% 58.3%