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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00136
Bact-VirPHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00136
Identity
- Kingdom:
- phage
Quality
80.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-125
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.66 | 40.0 | 4.49e-01 | 88.7% | 84.2% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.65 | 45.0 | 3.94e-01 | 72.5% | 88.0% |
| 2qyxB01 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.59 | 40.0 | 3.67e-01 | 75.0% | 51.4% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 42.0 | 4.21e-01 | 82.5% | 77.8% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 34.0 | 3.21e-01 | 95.0% | 48.5% |
| 3ei3A04 | 1.10.150.910 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.56 | 40.0 | 3.99e-01 | 93.8% | 71.8% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 51.0 | 4.32e-01 | 100.0% | 63.0% |
| 2qsfA04 | 3.30.70.2460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Rad4, beta-hairpin domain BHD3 | 0.55 | 37.0 | 3.87e-01 | 76.2% | 80.0% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 42.0 | 3.83e-01 | 87.5% | 69.0% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 43.0 | 4.00e-01 | 95.0% | 68.7% |
| 4b8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 3.83e-01 | 100.0% | 54.3% |
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.53 | 46.0 | 3.39e-01 | 100.0% | 54.8% |
| 4p55B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.47e-01 | 72.5% | 82.3% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 47.0 | 4.46e-01 | 100.0% | 88.5% |
| 2l9dA00 | 3.30.70.2340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 | 0.52 | 37.0 | 3.38e-01 | 75.0% | 65.7% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 46.0 | 3.83e-01 | 100.0% | 58.9% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 42.0 | 3.86e-01 | 88.7% | 68.9% |
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 43.0 | 4.03e-01 | 95.0% | 87.5% |
| 5jgfA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 41.0 | 2.83e-01 | 91.3% | 72.7% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 4.05e-01 | 97.5% | 72.4% |
| 3skvA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 44.0 | 3.30e-01 | 95.0% | 94.0% |
| 3kzgA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 37.0 | 3.32e-01 | 82.5% | 87.6% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 40.0 | 3.68e-01 | 87.5% | 72.4% |
| 1ixcA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 37.0 | 3.48e-01 | 80.0% | 94.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.67 | 60.0 | 3.44e-01 | 100.0% | 29.2% | |
| 4278038 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 59.0 | 3.41e-01 | 100.0% | 28.4% |
| 4991995 | 3696.1.1.2 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD | 0.66 | 43.0 | 4.68e-01 | 88.7% | 81.5% |
| 4969654 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.64 | 57.0 | 3.94e-01 | 100.0% | 73.0% |
| 3214720 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 38.0 | 3.57e-01 | 93.8% | 48.4% |
| 4680501 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.64 | 57.0 | 3.85e-01 | 100.0% | 73.4% |
| 3859550 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.63 | 39.0 | 3.42e-01 | 97.5% | 41.7% |
| 4076057 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.62 | 54.0 | 3.71e-01 | 100.0% | 71.0% |
| 2631980 | 3696.1.1.2 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD | 0.62 | 38.0 | 3.89e-01 | 88.7% | 62.3% |
| 4951445 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.62 | 54.0 | 3.70e-01 | 100.0% | 71.5% |
| 4928315 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.62 | 40.0 | 4.11e-01 | 100.0% | 69.3% |
| 4962753 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.62 | 54.0 | 3.73e-01 | 100.0% | 75.7% |
| 3178263 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 51.0 | 3.50e-01 | 100.0% | 74.7% |
| 3939311 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 37.0 | 3.36e-01 | 97.5% | 46.4% |
| 3820897 | 109.4.1.1682 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHM7_cyt | 0.59 | 39.0 | 4.22e-01 | 100.0% | 78.6% |
| 4125952 | 602.1.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like | 0.58 | 51.0 | 3.40e-01 | 100.0% | 48.9% |
| 4156329 | 304.11.1.4 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › FAS_AT_central | 0.58 | 40.0 | 4.04e-01 | 72.5% | 72.5% |
| 4418839 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.58 | 50.0 | 3.53e-01 | 100.0% | 60.0% |
| 4954228 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.58 | 40.0 | 3.68e-01 | 75.0% | 53.5% |
| 4159140 | 601.23.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III | 0.57 | 51.0 | 3.16e-01 | 100.0% | 44.0% |
| 54507 | 601.8.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Outer surface protein C (OspC) › Outer surface protein C (OspC) | 0.57 | 49.0 | 4.01e-01 | 100.0% | 80.2% |
| 5057410 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.57 | 48.0 | 3.26e-01 | 93.8% | 78.0% |
| 4250185 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.56 | 49.0 | 3.46e-01 | 100.0% | 54.8% |
| 4933447 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.56 | 49.0 | 3.43e-01 | 100.0% | 60.0% |
| 4499350 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.56 | 44.0 | 3.14e-01 | 90.0% | 84.3% |
| 4334872 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.56 | 48.0 | 3.25e-01 | 97.5% | 71.5% |
| 4520826 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.56 | 47.0 | 3.22e-01 | 92.5% | 51.4% |
| None | — | 0.56 | 48.0 | 3.35e-01 | 97.5% | 81.9% | |
| 4970541 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 4.06e-01 | 98.8% | 67.0% |
| 3418785 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.56 | 46.0 | 3.52e-01 | 95.0% | 72.2% |
| 3394840 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.55 | 47.0 | 3.30e-01 | 100.0% | 57.1% |
| 4269228 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.54 | 38.0 | 3.47e-01 | 75.0% | 53.6% |
| 5027627 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.54 | 36.0 | 4.16e-01 | 75.0% | 100.0% |
| 3515383 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.54 | 38.0 | 3.60e-01 | 75.0% | 61.0% |
| 3928288 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.54 | 40.0 | 3.50e-01 | 95.0% | 52.5% |
| 4938492 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 4.29e-01 | 93.8% | 85.0% |
| 2163487 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 41.0 | 3.76e-01 | 86.3% | 69.1% |
| 4142165 | 2003.1.3.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo | 0.52 | 42.0 | 2.93e-01 | 90.0% | 70.3% |
| 3600149 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.52 | 41.0 | 3.84e-01 | 95.0% | 69.0% |
| 4946164 | 1036.1.1.0 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain | 0.52 | 38.0 | 3.51e-01 | 86.3% | 60.0% |
| 3348724 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 37.0 | 3.40e-01 | 75.0% | 64.8% |
| 3597033 | 2003.1.5.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F | 0.51 | 42.0 | 2.74e-01 | 95.0% | 63.4% |
| 4947231 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.51 | 45.0 | 3.04e-01 | 100.0% | 86.2% |
| 4017591 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.50 | 38.0 | 3.81e-01 | 86.3% | 80.0% |