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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00157

Bact-Vir

PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00157

Identity

Kingdom:
phage

Quality

91.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.57 28.0 3.40e-01 84.0% 72.1%
3sibA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 44.0 3.47e-01 86.2% 58.1%
3bhgA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.55 38.0 3.58e-01 71.3% 80.0%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 42.0 3.44e-01 85.1% 61.6%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.54 37.0 3.16e-01 71.3% 75.8%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.53 30.0 3.56e-01 78.7% 80.3%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3209237 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 41.0 3.53e-01 71.3% 48.7%
3677437 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.57 43.0 4.02e-01 79.8% 92.2%
4474891 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.57 37.0 2.66e-01 97.9% 21.4%
3704554 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 46.0 4.76e-01 89.4% 95.5%
3699966 148.1.3.10 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.56 45.0 4.29e-01 92.6% 75.5%
4958277 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.55 40.0 3.27e-01 78.7% 86.2%
3688460 5054.1.1.83 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Tcp11 0.51 41.0 3.13e-01 85.1% 79.5%
3307346 2485.1.1.51 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.51 41.0 3.05e-01 89.4% 58.5%
4424897 103.15.1.3 ↗ alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23, MRP-S25 0.51 35.0 3.26e-01 72.3% 56.3%
D2 high residues 99-210
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c1kA02 1.10.220.50 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain 0.71 65.0 6.47e-01 100.0% 99.1%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 31.0 3.00e-01 100.0% 39.8%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 30.0 3.29e-01 87.5% 59.4%
8hk0A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 39.0 3.84e-01 98.2% 66.4%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 31.0 2.82e-01 85.7% 41.6%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 38.0 3.57e-01 74.1% 94.2%
3feyA02 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 39.0 3.33e-01 77.7% 49.0%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.52 34.0 3.05e-01 100.0% 46.3%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 36.0 3.33e-01 98.2% 56.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3284117 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.58 36.0 3.40e-01 100.0% 51.1%
3595315 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.56 40.0 4.10e-01 81.2% 77.3%
3522521 5086.1.1.90 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I 0.51 30.0 2.84e-01 85.7% 47.1%
3290165 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.51 41.0 3.34e-01 86.6% 84.2%
5065210 604.4.1.0 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.51 35.0 3.99e-01 100.0% 97.5%
3199081 620.1.1.4 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 0.51 36.0 3.11e-01 97.3% 48.5%
3797233 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.50 37.0 3.21e-01 76.8% 86.7%