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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00219
Bact-VirPHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00219
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-91
D2
high
residues 105-135_308-428
Domain cluster:
rep: pre3_saliva_scaffold_6_prodigal-single.1__X__X__00185__D409-448_513-610
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dt9A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 25.0 | 3.51e-01 | 89.5% | 81.1% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.58 | 29.0 | 3.38e-01 | 93.4% | 66.3% |
| 3wmqA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 33.0 | 4.07e-01 | 70.4% | 94.7% |
| 4ewtA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.69e-01 | 78.3% | 77.4% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 31.0 | 3.41e-01 | 90.1% | 68.3% |
| 3e38A02 | 2.60.40.3090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 28.0 | 3.68e-01 | 96.7% | 92.4% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 26.0 | 3.28e-01 | 84.2% | 77.6% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 29.0 | 3.48e-01 | 70.4% | 78.1% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.52 | 30.0 | 3.87e-01 | 88.8% | 97.8% |
| 2ztbA03 | 2.60.40.3040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 17.0 | 2.74e-01 | 79.6% | 83.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3580020 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 56.0 | 5.14e-01 | 93.4% | 100.0% |
| 4937817 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 39.0 | 4.53e-01 | 94.7% | 91.8% |
| 3514856 | 1181.1.1.0 ↗ | 0.58 | 28.0 | 3.90e-01 | 75.0% | 93.3% | |
| 4958478 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 3.95e-01 | 94.7% | 85.0% |
| 3588730 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.54 | 29.0 | 3.55e-01 | 71.7% | 81.1% |
| 4992376 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 28.0 | 3.82e-01 | 86.8% | 100.0% |
| 5050142 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.53 | 38.0 | 3.92e-01 | 78.9% | 77.9% |
| 4936511 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.52 | 31.0 | 3.61e-01 | 78.9% | 80.9% |
| 1165730 | 10.20.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N_2 | 0.52 | 30.0 | 3.52e-01 | 74.3% | 82.2% |
| 4049751 | 11.1.1.148 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixG_C | 0.51 | 31.0 | 3.58e-01 | 95.4% | 80.0% |
| 3401330 | 304.44.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 | 0.51 | 29.0 | 3.23e-01 | 71.7% | 69.2% |
| 3306477 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.51 | 31.0 | 3.35e-01 | 94.7% | 70.4% |
| 3490450 | 11.1.1.928 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_4th | 0.51 | 29.0 | 3.72e-01 | 88.8% | 98.8% |
| 4929832 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.51 | 25.0 | 3.00e-01 | 71.1% | 69.2% |
| 4991252 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.50 | 26.0 | 3.17e-01 | 78.3% | 76.8% |
D3
high
residues 139-228