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PHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00251
Bact-VirPHAGE-A11--js4906-26-5_S28_scaffold_6_curated_closed_complete_prodigal-single.1__X__X__00251
Identity
- Kingdom:
- phage
Quality
71.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 212-286
Domain cluster:
rep: IMGVR_UViG_3300025770_001206-3300025770-Ga0209362_10044857__D8-50_88-143
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.86 | 50.0 | 5.54e-01 | 93.3% | 73.3% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.73 | 45.0 | 3.94e-01 | 93.3% | 43.0% |
| 1wthA02 | 3.10.450.190 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 61.0 | 5.38e-01 | 100.0% | 97.1% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.63 | 48.0 | 4.08e-01 | 100.0% | 50.4% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.62 | 42.0 | 3.62e-01 | 93.3% | 44.1% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 43.0 | 3.26e-01 | 81.3% | 60.3% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 47.0 | 3.99e-01 | 96.0% | 63.0% |
| 7apkF01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 38.0 | 2.59e-01 | 74.7% | 44.2% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 49.0 | 3.98e-01 | 100.0% | 84.9% |
| 5cfvA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.54 | 42.0 | 3.74e-01 | 84.0% | 68.2% |
| 1xeaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 40.0 | 3.08e-01 | 93.3% | 32.3% |
| 1vavA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.15e-01 | 92.0% | 79.7% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.76e-01 | 97.3% | 60.4% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 45.0 | 3.61e-01 | 98.7% | 63.7% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 45.0 | 3.71e-01 | 97.3% | 58.2% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 45.0 | 3.48e-01 | 94.7% | 78.5% |
| 3sh4A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.12e-01 | 89.3% | 54.4% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 45.0 | 3.76e-01 | 98.7% | 71.9% |
| 6hoxA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.03e-01 | 90.7% | 56.5% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.51 | 45.0 | 3.41e-01 | 100.0% | 85.6% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.20e-01 | 90.7% | 59.6% |
| 1tltA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 38.0 | 2.98e-01 | 92.0% | 33.9% |
| 1nkgA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 44.0 | 3.10e-01 | 100.0% | 89.6% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 3.69e-01 | 96.0% | 72.6% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.50 | 44.0 | 3.41e-01 | 98.7% | 51.5% |
| 6mlyB01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 40.0 | 2.78e-01 | 88.0% | 35.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 441013 | 79.1.1.1 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp5_C | 0.86 | 58.0 | 3.99e-01 | 94.7% | 23.7% |
| 2559748 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.84 | 54.0 | 4.06e-01 | 93.3% | 30.6% |
| 2468517 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.75 | 53.0 | 3.95e-01 | 100.0% | 30.9% |
| 3912697 | 292.2.1.3 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB2 | 0.69 | 44.0 | 3.87e-01 | 94.7% | 43.6% |
| 3890932 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.69 | 61.0 | 3.97e-01 | 100.0% | 81.5% |
| 4956163 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.65 | 48.0 | 3.66e-01 | 92.0% | 33.3% |
| 2998372 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.64 | 43.0 | 5.01e-01 | 89.3% | 98.1% |
| 3975056 | 241.13.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA | 0.62 | 45.0 | 3.77e-01 | 98.7% | 44.6% |
| 3496493 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.60 | 52.0 | 3.95e-01 | 97.3% | 61.1% |
| 1554358 | 3146.1.1.1 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H | 0.59 | 47.0 | 2.80e-01 | 86.7% | 17.2% |
| 4303960 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.59 | 45.0 | 2.88e-01 | 81.3% | 38.6% |
| 3208760 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.58 | 40.0 | 3.75e-01 | 73.3% | 70.5% |
| 3222216 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 40.0 | 4.17e-01 | 96.0% | 81.4% |
| 3962450 | 9.27.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › LpqH › LpqH | 0.57 | 45.0 | 4.01e-01 | 92.0% | 61.0% |
| 1108143 | 3772.1.1.1 ↗ | beta sandwiches › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › Putative anti-sigma factor BDI_1681 N-terminal domain › FecR | 0.54 | 49.0 | 4.05e-01 | 100.0% | 89.4% |
| 3898360 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.54 | 46.0 | 4.05e-01 | 93.3% | 98.2% |
| 5011042 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.54 | 45.0 | 3.77e-01 | 92.0% | 63.8% |
| 3894207 | 3369.1.1.1 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal | 0.53 | 47.0 | 3.72e-01 | 98.7% | 64.9% |
| 5014686 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.53 | 35.0 | 3.90e-01 | 88.0% | 92.7% |
| 1171961 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.53 | 35.0 | 3.75e-01 | 88.0% | 79.4% |
| 5014685 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 40.0 | 4.26e-01 | 89.3% | 92.3% |
| 119302 | 3146.1.1.0 ↗ | a+b complex topology › gH main domain › gH main domain › gH main domain | 0.53 | 44.0 | 2.89e-01 | 92.0% | 20.8% |
| 3709736 | 5.1.4.238 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7048 | 0.52 | 45.0 | 2.86e-01 | 96.0% | 47.0% |
| 3929846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 41.0 | 2.75e-01 | 88.0% | 29.9% |
| 4027842 | 5.1.3.117 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 | 0.51 | 43.0 | 2.89e-01 | 97.3% | 42.1% |
| 3591269 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 41.0 | 2.73e-01 | 89.3% | 44.7% |
D2
medium
residues 326-402_440-490_503-563
D3
medium
residues 654-683_713-755
Domain cluster:
representative
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1566366 | 223.1.1.1 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PHY | 0.53 | 44.0 | 3.38e-01 | 97.3% | 53.4% |
| 3887701 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.52 | 31.0 | 2.61e-01 | 80.8% | 35.8% |
| 3484268 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 38.0 | 2.83e-01 | 82.2% | 35.0% |
| 3695165 | 11.2.1.62 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF29106 | 0.50 | 38.0 | 2.92e-01 | 83.6% | 41.1% |