←Back to structures
PHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00150
Bact-VirPHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00150
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-79
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.61 | 44.0 | 3.99e-01 | 98.7% | 56.3% |
| 1ekzA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 46.0 | 4.65e-01 | 93.5% | 84.2% |
| 6n8pA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 51.0 | 3.26e-01 | 93.5% | 23.1% |
| 4ia6B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 3.07e-01 | 83.1% | 49.5% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.57 | 49.0 | 4.44e-01 | 100.0% | 70.1% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 43.0 | 4.51e-01 | 87.0% | 90.1% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 40.0 | 4.42e-01 | 79.2% | 98.3% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 49.0 | 4.04e-01 | 100.0% | 77.4% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.56 | 39.0 | 3.39e-01 | 92.2% | 47.0% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 45.0 | 3.36e-01 | 85.7% | 80.2% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 45.0 | 3.46e-01 | 100.0% | 36.9% |
| 1vwxk00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 33.0 | 3.48e-01 | 81.8% | 66.7% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.55 | 47.0 | 4.39e-01 | 100.0% | 93.9% |
| 3fy6A01 | 3.30.2210.10 | Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily | 0.55 | 38.0 | 3.42e-01 | 94.8% | 52.3% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 41.0 | 4.16e-01 | 89.6% | 82.1% |
| 3uuwB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 45.0 | 3.48e-01 | 100.0% | 39.7% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.54 | 43.0 | 3.87e-01 | 100.0% | 61.6% |
| 2gu1A02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 46.0 | 4.19e-01 | 96.1% | 75.0% |
| 2cm4A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 3.73e-01 | 96.1% | 90.3% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.53 | 34.0 | 3.52e-01 | 76.6% | 68.9% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 43.0 | 3.90e-01 | 93.5% | 92.0% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 37.0 | 3.43e-01 | 84.4% | 57.1% |
| 2yt4A03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 41.0 | 3.71e-01 | 93.5% | 61.5% |
| 5bulA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 2.65e-01 | 87.0% | 71.2% |
| 3lzwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 3.69e-01 | 93.5% | 89.1% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 40.0 | 2.87e-01 | 85.7% | 63.6% |
| 3wz2B00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.51 | 42.0 | 3.19e-01 | 100.0% | 76.3% |
| 7qi3A01 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.51 | 42.0 | 2.81e-01 | 92.2% | 75.1% |
| 1ebdA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 3.62e-01 | 93.5% | 90.1% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 37.0 | 3.86e-01 | 88.3% | 88.7% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.50 | 35.0 | 3.58e-01 | 85.7% | 73.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960279 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.73 | 34.0 | 4.13e-01 | 75.3% | 68.0% |
| 3569539 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 51.0 | 3.82e-01 | 75.3% | 35.6% |
| 3759576 | 2484.1.1.288 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PML_C | 0.69 | 51.0 | 3.46e-01 | 76.6% | 24.7% |
| 5041307 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 50.0 | 3.43e-01 | 76.6% | 48.1% |
| 4290521 | 2484.1.1.91 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like | 0.67 | 49.0 | 3.33e-01 | 76.6% | 34.7% |
| 1866795 | 2484.1.1.91 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like | 0.67 | 48.0 | 3.40e-01 | 75.3% | 40.6% |
| 5027238 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.66 | 48.0 | 3.88e-01 | 77.9% | 93.3% |
| 4959100 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 48.0 | 3.28e-01 | 77.9% | 43.9% |
| 5023640 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.65 | 38.0 | 3.80e-01 | 80.5% | 55.7% |
| 5018729 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.63 | 38.0 | 3.40e-01 | 71.4% | 41.8% |
| 3909399 | 233.1.1.0 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain | 0.62 | 34.0 | 3.36e-01 | 74.0% | 50.0% |
| 3414555 | 5.1.4.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL | 0.62 | 56.0 | 3.14e-01 | 98.7% | 24.6% |
| 3623810 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 37.0 | 3.50e-01 | 76.6% | 49.5% |
| 3221377 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.61 | 49.0 | 4.25e-01 | 85.7% | 74.8% |
| 3387410 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 43.0 | 3.80e-01 | 79.2% | 98.3% |
| 4011453 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 40.0 | 3.30e-01 | 71.4% | 55.7% |
| 3486370 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 49.0 | 3.18e-01 | 93.5% | 22.5% |
| 3494246 | 5.1.4.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL | 0.58 | 51.0 | 3.06e-01 | 97.4% | 26.4% |
| 5068292 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.57 | 45.0 | 3.34e-01 | 84.4% | 35.4% |
| 4385448 | 220.1.1.154 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 | 0.57 | 39.0 | 2.87e-01 | 70.1% | 44.1% |
| 3408937 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 44.0 | 4.38e-01 | 94.8% | 81.2% |
| 3740383 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.57 | 50.0 | 3.22e-01 | 100.0% | 22.2% |
| 3537696 | 220.1.1.66 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH | 0.56 | 39.0 | 3.10e-01 | 71.4% | 50.0% |
| 5042099 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.55 | 45.0 | 4.02e-01 | 100.0% | 61.7% |
| 3938972 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 43.0 | 4.34e-01 | 93.5% | 86.7% |
| 3329408 | 3887.2.1.0 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 | 0.54 | 37.0 | 3.79e-01 | 88.3% | 74.7% |
| 3730099 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 44.0 | 4.51e-01 | 98.7% | 95.9% |
| 3937660 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 43.0 | 2.94e-01 | 87.0% | 24.9% |
| 4946341 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.53 | 44.0 | 3.04e-01 | 97.4% | 27.8% |
| 3896251 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 33.0 | 2.94e-01 | 71.4% | 40.0% |
| 3186506 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.53 | 46.0 | 2.96e-01 | 100.0% | 43.7% |
| 4992470 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.52 | 31.0 | 3.42e-01 | 81.8% | 75.0% |
| 4551833 | 2003.1.2.58 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 | 0.52 | 41.0 | 3.58e-01 | 90.9% | 82.3% |
| 4191831 | 220.1.1.217 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM | 0.52 | 41.0 | 2.90e-01 | 89.6% | 63.8% |
| 3677778 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.52 | 43.0 | 2.89e-01 | 93.5% | 25.2% |
| 3619283 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.51 | 43.0 | 2.76e-01 | 92.2% | 28.6% |
| 3216768 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 43.0 | 3.99e-01 | 97.4% | 72.4% |
| 4939857 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 41.0 | 3.43e-01 | 93.5% | 72.0% |
| 3549045 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 42.0 | 3.85e-01 | 97.4% | 70.0% |