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PHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00236
Bact-VirPHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
63.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-103
D2
high
residues 108-165
Domain cluster:
rep: MN549360.1__QGZ14037.1__RL38J1_259__00259__D5-63
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j8bA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.87 | 43.0 | 3.58e-01 | 100.0% | 30.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.72 | 54.0 | 3.92e-01 | 82.8% | 47.9% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.71 | 60.0 | 5.35e-01 | 93.1% | 89.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.70 | 59.0 | 4.97e-01 | 94.8% | 82.0% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.70 | 59.0 | 5.26e-01 | 94.8% | 89.2% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.68 | 59.0 | 5.02e-01 | 98.3% | 63.5% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.65 | 54.0 | 4.59e-01 | 96.6% | 72.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 54.0 | 4.77e-01 | 100.0% | 98.9% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.64 | 51.0 | 4.84e-01 | 98.3% | 73.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.64 | 53.0 | 4.66e-01 | 100.0% | 76.6% |
| 3dshA01 | 2.60.200.10 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.63 | 49.0 | 3.35e-01 | 84.5% | 87.1% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.62 | 55.0 | 4.54e-01 | 100.0% | 63.1% |
| 1ypzF01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 53.0 | 4.22e-01 | 100.0% | 66.7% |
| 2vfrA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.61 | 41.0 | 3.20e-01 | 81.0% | 31.5% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 52.0 | 4.27e-01 | 100.0% | 69.6% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.60 | 50.0 | 4.64e-01 | 96.6% | 76.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 43.0 | 4.03e-01 | 81.0% | 72.4% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 43.0 | 3.75e-01 | 81.0% | 66.3% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 36.0 | 2.80e-01 | 91.4% | 27.7% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 44.0 | 4.70e-01 | 81.0% | 95.9% |
| 4bwsF00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 45.0 | 4.38e-01 | 96.6% | 77.6% |
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 32.0 | 3.77e-01 | 98.3% | 96.7% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 2.93e-01 | 87.9% | 38.0% |
| 2hh8A00 | 3.30.1810.10 | Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like | 0.56 | 45.0 | 3.53e-01 | 89.7% | 80.3% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.55 | 43.0 | 3.32e-01 | 87.9% | 70.0% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 43.0 | 3.41e-01 | 91.4% | 49.3% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 3.35e-01 | 82.8% | 66.4% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.54 | 38.0 | 3.02e-01 | 75.9% | 59.1% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 42.0 | 2.49e-01 | 87.9% | 14.5% |
| 2i7gB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.53 | 41.0 | 2.62e-01 | 87.9% | 49.0% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.53 | 36.0 | 3.03e-01 | 74.1% | 37.9% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.53 | 43.0 | 2.89e-01 | 89.7% | 23.4% |
| 3l2bA01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 37.0 | 3.06e-01 | 82.8% | 37.6% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.53 | 42.0 | 2.79e-01 | 100.0% | 30.8% |
| 5jeaD00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 43.0 | 2.97e-01 | 94.8% | 63.4% |
| 3erwF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 39.0 | 3.23e-01 | 87.9% | 51.9% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.52 | 39.0 | 3.08e-01 | 100.0% | 35.7% |
| 3kcmF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.14e-01 | 87.9% | 50.0% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 3.18e-01 | 93.1% | 55.6% |
| 4cooA03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 35.0 | 2.84e-01 | 84.5% | 32.1% |
| 4lrjA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 4.05e-01 | 96.6% | 79.5% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.50 | 40.0 | 2.99e-01 | 84.5% | 89.5% |
| 3snoA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.50 | 38.0 | 3.10e-01 | 86.2% | 97.5% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.91 | 72.0 | 6.49e-01 | 82.8% | 97.3% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.89 | 67.0 | 6.22e-01 | 79.3% | 98.6% |
| 4231372 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.89 | 68.0 | 6.32e-01 | 81.0% | 98.6% |
| 3706132 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.75 | 65.0 | 5.78e-01 | 98.3% | 100.0% |
| 3959440 | 4.1.1.180 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3107 | 0.74 | 56.0 | 5.39e-01 | 81.0% | 100.0% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.73 | 46.0 | 4.63e-01 | 82.8% | 63.3% |
| 5017559 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 52.0 | 5.02e-01 | 77.6% | 98.5% |
| 5007155 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.71 | 48.0 | 5.20e-01 | 81.0% | 91.1% |
| 3723377 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.68 | 59.0 | 4.65e-01 | 100.0% | 67.2% |
| 3686690 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.67 | 58.0 | 5.11e-01 | 98.3% | 97.6% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.65 | 53.0 | 3.28e-01 | 89.7% | 47.5% |
| 185296 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.65 | 55.0 | 3.89e-01 | 100.0% | 69.3% |
| 3539015 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.65 | 50.0 | 3.96e-01 | 86.2% | 56.5% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.63 | 53.0 | 3.73e-01 | 98.3% | 28.2% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 54.0 | 3.62e-01 | 98.3% | 25.3% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 52.0 | 3.57e-01 | 100.0% | 25.6% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 45.0 | 4.83e-01 | 79.3% | 98.0% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 45.0 | 4.78e-01 | 82.8% | 92.0% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.61 | 52.0 | 3.56e-01 | 98.3% | 25.3% |
| 3940081 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.61 | 45.0 | 3.05e-01 | 79.3% | 90.4% |
| 3279952 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 53.0 | 4.54e-01 | 100.0% | 68.4% |
| 3721580 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 50.0 | 3.23e-01 | 98.3% | 47.0% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 45.0 | 3.49e-01 | 84.5% | 37.0% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.59 | 49.0 | 4.91e-01 | 98.3% | 93.3% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.59 | 44.0 | 3.93e-01 | 84.5% | 87.8% |
| 4982792 | 2.1.1.80 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB | 0.59 | 44.0 | 3.25e-01 | 82.8% | 32.5% |
| 3726900 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.59 | 51.0 | 4.19e-01 | 100.0% | 70.9% |
| 3496147 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.59 | 42.0 | 3.67e-01 | 81.0% | 68.0% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.58 | 41.0 | 4.37e-01 | 82.8% | 97.8% |
| 4031792 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.58 | 42.0 | 2.87e-01 | 81.0% | 81.3% |
| 3410567 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.57 | 44.0 | 3.56e-01 | 86.2% | 98.3% |
| 5032187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 40.0 | 4.08e-01 | 75.9% | 94.5% |
| 5019693 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.56 | 41.0 | 4.42e-01 | 79.3% | 100.0% |
| 5002387 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 48.0 | 3.09e-01 | 100.0% | 61.8% |
| 3936863 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 45.0 | 3.03e-01 | 93.1% | 44.1% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 39.0 | 4.09e-01 | 81.0% | 94.0% |
| 4028716 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.54 | 46.0 | 3.62e-01 | 100.0% | 83.7% |
| 3255812 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 44.0 | 2.78e-01 | 100.0% | 81.1% |
| 4959143 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 46.0 | 3.62e-01 | 100.0% | 53.8% |
| 3221919 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.53 | 43.0 | 2.69e-01 | 94.8% | 49.5% |
| 3998576 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 39.0 | 2.82e-01 | 77.6% | 56.6% |
| 138941 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.53 | 38.0 | 3.69e-01 | 84.5% | 69.2% |
| 4406921 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 40.0 | 3.62e-01 | 86.2% | 95.3% |
| 5049313 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 42.0 | 3.33e-01 | 94.8% | 81.4% |
| 3889364 | 221.1.1.164 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF29299 | 0.52 | 43.0 | 3.99e-01 | 100.0% | 98.8% |
| 3472861 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 39.0 | 3.38e-01 | 87.9% | 81.0% |
| 3167568 | 101.46.1.0 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain | 0.51 | 36.0 | 2.90e-01 | 75.9% | 41.7% |
| 4951717 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 37.0 | 3.51e-01 | 82.8% | 96.0% |
| 1196726 | 2485.1.1.37 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 | 0.51 | 36.0 | 2.86e-01 | 79.3% | 41.0% |
D3
high
residues 222-370
Domain cluster:
rep: KJ410740.1__AHV82153.1__X__00028__D42-182