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PHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00257
Bact-VirPHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00257
Identity
- Kingdom:
- phage
Quality
60.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 257-382
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00119__D225-339
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jmxA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.68 | 51.0 | 5.39e-01 | 100.0% | 90.8% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.64 | 39.0 | 4.12e-01 | 99.2% | 66.4% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.62 | 47.0 | 4.13e-01 | 80.2% | 80.6% |
| 7dmdA01 | 3.15.10.20 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain | 0.59 | 44.0 | 4.37e-01 | 78.6% | 89.4% |
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 50.0 | 4.61e-01 | 100.0% | 73.9% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 52.0 | 4.64e-01 | 100.0% | 74.4% |
| 1l7aA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 45.0 | 3.40e-01 | 86.5% | 72.6% |
| 3g8yA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 44.0 | 3.10e-01 | 83.3% | 47.1% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 50.0 | 4.63e-01 | 100.0% | 77.5% |
| 3al9A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 46.0 | 3.09e-01 | 87.3% | 50.4% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 3.38e-01 | 87.3% | 74.1% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 4.51e-01 | 100.0% | 81.7% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 48.0 | 4.46e-01 | 100.0% | 75.5% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 49.0 | 4.37e-01 | 100.0% | 69.4% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 49.0 | 4.79e-01 | 100.0% | 92.6% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 38.0 | 4.09e-01 | 86.5% | 87.0% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.92e-01 | 70.6% | 100.0% |
| 3bgaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 45.0 | 3.59e-01 | 96.0% | 92.2% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 45.0 | 3.48e-01 | 94.4% | 90.7% |
| 4mmhA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 47.0 | 3.62e-01 | 100.0% | 71.1% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 47.0 | 3.64e-01 | 100.0% | 72.3% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 44.0 | 4.08e-01 | 100.0% | 72.6% |
| 3wasA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 41.0 | 3.02e-01 | 91.3% | 70.2% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 42.0 | 4.29e-01 | 89.7% | 93.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4793345 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.68 | 51.0 | 5.45e-01 | 100.0% | 92.5% |
| 4961667 | 5084.1.1.45 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 | 0.67 | 53.0 | 5.54e-01 | 100.0% | 90.4% |
| 3060391 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.67 | 52.0 | 5.46e-01 | 100.0% | 90.4% |
| 3335615 | 331.3.1.1 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 | 0.65 | 42.0 | 4.59e-01 | 75.4% | 78.1% |
| 4026208 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.65 | 40.0 | 4.24e-01 | 86.5% | 67.8% |
| 3352272 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.64 | 40.0 | 4.20e-01 | 99.2% | 67.8% |
| 3065351 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.64 | 54.0 | 5.42e-01 | 100.0% | 89.8% |
| 3931614 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.63 | 39.0 | 4.06e-01 | 100.0% | 66.1% |
| 3627111 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 44.0 | 2.97e-01 | 70.6% | 36.4% |
| 3270919 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.63 | 39.0 | 4.05e-01 | 99.2% | 67.0% |
| 4026594 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.62 | 39.0 | 4.09e-01 | 100.0% | 68.6% |
| 3342595 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.60 | 51.0 | 4.66e-01 | 100.0% | 68.2% |
| 3617638 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.59 | 35.0 | 3.84e-01 | 87.3% | 70.5% |
| 3715465 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.59 | 37.0 | 3.84e-01 | 98.4% | 66.7% |
| 1888731 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 52.0 | 4.62e-01 | 100.0% | 74.0% |
| 3466699 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 37.0 | 4.12e-01 | 86.5% | 83.7% |
| 5047489 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 45.0 | 3.85e-01 | 100.0% | 51.7% |
| 3946522 | 9.1.1.36 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 | 0.57 | 50.0 | 4.74e-01 | 100.0% | 87.1% |
| 4986587 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.56 | 36.0 | 3.79e-01 | 80.2% | 70.4% |
| 3736685 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 44.0 | 4.01e-01 | 83.3% | 83.5% |
| 3729648 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.56 | 48.0 | 4.78e-01 | 100.0% | 91.5% |
| 4960887 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.56 | 36.0 | 3.82e-01 | 81.0% | 71.3% |
| 3807906 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.56 | 50.0 | 4.19e-01 | 99.2% | 65.6% |
| 3743052 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.55 | 41.0 | 2.77e-01 | 78.6% | 92.4% |
| 3971848 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.54 | 50.0 | 4.18e-01 | 99.2% | 80.0% |
| 3973036 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 45.0 | 3.99e-01 | 91.3% | 97.8% |
| 3730429 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.53 | 46.0 | 4.50e-01 | 100.0% | 90.4% |
| 2546362 | 243.1.1.8 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC | 0.53 | 45.0 | 3.92e-01 | 91.3% | 96.3% |
| 136977 | 243.1.1.20 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4878 | 0.53 | 36.0 | 3.92e-01 | 70.6% | 100.0% |
| 3285547 | 243.1.1.80 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 | 0.53 | 41.0 | 4.47e-01 | 88.1% | 100.0% |
| 4311344 | 4252.1.1.13 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF27123 | 0.51 | 39.0 | 4.11e-01 | 100.0% | 91.3% |
| 3734800 | 5.1.4.39 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 | 0.50 | 44.0 | 3.09e-01 | 100.0% | 79.1% |
| 138908 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.50 | 42.0 | 4.29e-01 | 89.7% | 93.3% |
D2
medium
residues 70-125_191-206