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PHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00274
Bact-VirPHAGE-A12--js4906-22-5_S12_scaffold_9_curated_closed_complete_prodigal-single.1__X__X__00274
Identity
- Kingdom:
- phage
Quality
63.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-138
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3prbA03 | 3.30.70.2210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 47.0 | 5.43e-01 | 79.0% | 93.2% |
| 2xr1A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.69 | 42.0 | 4.89e-01 | 77.0% | 85.9% |
| 2cxcA01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.69 | 42.0 | 4.96e-01 | 76.0% | 88.4% |
| 7r3bE01 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.65 | 48.0 | 5.26e-01 | 77.0% | 96.3% |
| 3tufA00 | 1.10.287.4300 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like | 0.65 | 39.0 | 3.72e-01 | 77.0% | 51.3% |
| 7a2dA01 | 6.10.20.90 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › Hk620 tailspike protein, N-terminal domain-like | 0.63 | 39.0 | 4.41e-01 | 77.0% | 87.3% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 44.0 | 4.14e-01 | 73.0% | 93.4% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.62 | 35.0 | 4.01e-01 | 77.0% | 77.9% |
| 4alzA02 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.62 | 38.0 | 4.40e-01 | 77.0% | 89.7% |
| 3bypA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.62 | 43.0 | 4.72e-01 | 77.0% | 89.0% |
| 1floA01 | 3.30.300.80 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | 0.61 | 50.0 | 4.99e-01 | 90.0% | 91.4% |
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 38.0 | 4.57e-01 | 78.0% | 98.4% |
| 2rrlA01 | 3.30.750.140 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 45.0 | 4.32e-01 | 94.0% | 76.5% |
| 1euvA02 | 3.30.310.130 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Ubiquitin-related | 0.53 | 44.0 | 4.40e-01 | 97.0% | 87.6% |
| 3v8hC00 | 3.30.572.10 | Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain | 0.53 | 45.0 | 3.38e-01 | 100.0% | 67.0% |
| 2oivA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.51 | 39.0 | 3.34e-01 | 93.0% | 48.8% |
| 2fm8C01 | 1.10.4150.10 | Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like | 0.51 | 43.0 | 3.45e-01 | 93.0% | 66.7% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 36.0 | 3.79e-01 | 76.0% | 86.0% |
| 3owrA00 | 2.60.40.4120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.41e-01 | 77.0% | 95.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979017 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.73 | 42.0 | 4.85e-01 | 76.0% | 77.3% |
| 3994433 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.73 | 43.0 | 4.53e-01 | 78.0% | 65.6% |
| 3626665 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.73 | 43.0 | 4.43e-01 | 78.0% | 62.1% |
| 3610392 | 327.11.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › PSP1 | 0.72 | 45.0 | 4.19e-01 | 77.0% | 51.7% |
| 3705396 | 327.10.1.12 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 | 0.71 | 45.0 | 4.98e-01 | 76.0% | 80.0% |
| 3987781 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.70 | 44.0 | 4.87e-01 | 78.0% | 78.8% |
| 4932163 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.70 | 41.0 | 4.50e-01 | 78.0% | 71.2% |
| 4990765 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.70 | 48.0 | 5.62e-01 | 75.0% | 100.0% |
| 4167187 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.69 | 38.0 | 4.96e-01 | 79.0% | 98.2% |
| 4377130 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.69 | 41.0 | 5.11e-01 | 82.0% | 98.3% |
| 4217323 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.69 | 39.0 | 4.86e-01 | 75.0% | 93.3% |
| 3968954 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.68 | 44.0 | 4.79e-01 | 78.0% | 81.2% |
| 3503557 | 327.11.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › PSP1 | 0.67 | 44.0 | 4.44e-01 | 77.0% | 66.0% |
| 4442243 | 327.1.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › Pro_Al_protease | 0.67 | 39.0 | 4.54e-01 | 78.0% | 81.4% |
| 5053188 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.67 | 48.0 | 5.40e-01 | 79.0% | 98.7% |
| 5044613 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.67 | 41.0 | 4.76e-01 | 77.0% | 88.6% |
| 4105344 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.66 | 41.0 | 4.64e-01 | 77.0% | 82.7% |
| 5066304 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.66 | 41.0 | 4.70e-01 | 78.0% | 88.6% |
| 4052774 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.66 | 41.0 | 4.92e-01 | 77.0% | 96.9% |
| 3969125 | 3261.1.1.5 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_2nd | 0.65 | 42.0 | 4.91e-01 | 77.0% | 92.9% |
| 3788075 | 327.10.1.12 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 | 0.65 | 48.0 | 4.78e-01 | 77.0% | 76.2% |
| 3971370 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.65 | 40.0 | 4.58e-01 | 77.0% | 87.1% |
| 4959098 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.65 | 44.0 | 4.51e-01 | 78.0% | 72.6% |
| 4563228 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.65 | 48.0 | 5.15e-01 | 78.0% | 91.8% |
| 1565126 | 3261.1.1.7 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › CdsD_PD1 | 0.64 | 37.0 | 4.38e-01 | 78.0% | 86.2% |
| 4951626 | 327.13.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system | 0.64 | 39.0 | 4.19e-01 | 81.0% | 70.6% |
| 3987466 | 327.11.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KhpA-B_KH | 0.64 | 45.0 | 5.08e-01 | 74.0% | 100.0% |
| 3997033 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.63 | 42.0 | 4.45e-01 | 92.0% | 78.8% |
| 3963574 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.63 | 38.0 | 4.41e-01 | 77.0% | 85.7% |
| 3960824 | 327.11.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd | 0.63 | 41.0 | 4.73e-01 | 79.0% | 94.3% |
| 3588613 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.63 | 43.0 | 4.91e-01 | 80.0% | 97.3% |
| 3933475 | 213.1.1.6 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ | 0.63 | 41.0 | 3.92e-01 | 79.0% | 57.9% |
| 4166177 | 186.1.1.2 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N | 0.62 | 51.0 | 4.95e-01 | 90.0% | 93.6% |
| 4672778 | 327.18.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DNA_pol3_a_NI | 0.62 | 43.0 | 4.74e-01 | 72.0% | 91.3% |
| 4202300 | 601.1.1.131 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF373 | 0.62 | 42.0 | 3.98e-01 | 70.0% | 95.0% |
| 4313713 | 327.18.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DNA_pol3_a_NI | 0.62 | 43.0 | 4.62e-01 | 75.0% | 84.7% |
| 4247071 | 186.1.1.2 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N | 0.62 | 51.0 | 4.90e-01 | 91.0% | 84.3% |
| 3835991 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.62 | 45.0 | 4.66e-01 | 77.0% | 82.1% |
| 3988245 | 327.10.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NI | 0.61 | 43.0 | 4.66e-01 | 74.0% | 88.2% |
| 4571770 | 186.1.1.2 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N | 0.61 | 49.0 | 4.71e-01 | 90.0% | 86.7% |
| 3689488 | 327.10.1.12 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › PSP1 | 0.61 | 45.0 | 4.70e-01 | 77.0% | 86.7% |
| 2755279 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.60 | 35.0 | 4.18e-01 | 93.0% | 87.7% |
| 4995089 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.60 | 52.0 | 4.47e-01 | 98.0% | 78.2% |
| 4411713 | 327.1.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Alpha-lytic protease prodomain › Alpha-lytic protease prodomain › Pro_Al_protease | 0.59 | 35.0 | 4.02e-01 | 78.0% | 82.9% |
| 3059 | 186.1.1.2 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Flp_N | 0.59 | 49.0 | 4.61e-01 | 94.0% | 79.2% |
| 4472636 | 327.18.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › DNA_pol3_a_NI | 0.59 | 42.0 | 4.45e-01 | 75.0% | 87.1% |
| 3838454 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.59 | 43.0 | 4.63e-01 | 77.0% | 100.0% |
| 4446583 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.58 | 43.0 | 4.57e-01 | 78.0% | 95.3% |
| 4593384 | 327.10.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NI | 0.57 | 41.0 | 4.35e-01 | 75.0% | 87.1% |
| 3495281 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 42.0 | 2.82e-01 | 78.0% | 22.1% |
| 3710133 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.54 | 48.0 | 4.30e-01 | 99.0% | 92.9% |
| 4043600 | 327.18.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A | 0.54 | 38.0 | 4.07e-01 | 75.0% | 85.9% |
| 2554795 | 131.1.1.15 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III | 0.53 | 44.0 | 3.63e-01 | 90.0% | 64.8% |
| 3230740 | 5001.1.1.35 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx | 0.53 | 45.0 | 3.34e-01 | 97.0% | 78.9% |
| 4977425 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.52 | 36.0 | 3.83e-01 | 75.0% | 81.1% |
| 5077059 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.51 | 36.0 | 3.59e-01 | 80.0% | 70.5% |
D2
high
residues 191-335