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PHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00224
Bact-VirPHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00224
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-60
Domain cluster:
rep: MW824387.1__QZI91224.1__PODOV044v1_p0041__00041__D4-76
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.68 | 47.0 | 3.73e-01 | 72.7% | 94.6% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 47.0 | 4.06e-01 | 76.4% | 56.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.66 | 56.0 | 5.29e-01 | 98.2% | 86.6% |
| 5hr9A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 50.0 | 3.93e-01 | 92.7% | 39.3% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 45.0 | 4.82e-01 | 72.7% | 100.0% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 50.0 | 3.55e-01 | 90.9% | 84.2% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 49.0 | 4.68e-01 | 89.1% | 89.4% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 46.0 | 3.91e-01 | 81.8% | 67.0% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.62 | 43.0 | 3.58e-01 | 74.5% | 78.8% |
| 4fd0A01 | 2.60.40.3630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 42.0 | 3.81e-01 | 72.7% | 83.5% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 44.0 | 3.97e-01 | 76.4% | 71.8% |
| 5bncA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.61 | 50.0 | 4.30e-01 | 94.5% | 83.9% |
| 1nnxA00 | 2.40.50.200 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold | 0.61 | 42.0 | 3.54e-01 | 72.7% | 64.5% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.61 | 42.0 | 3.96e-01 | 72.7% | 71.6% |
| 2zpmA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.61 | 45.0 | 3.89e-01 | 78.2% | 93.0% |
| 1l1oF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 43.0 | 3.26e-01 | 74.5% | 63.4% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 42.0 | 3.85e-01 | 74.5% | 62.2% |
| 3duzA02 | 2.40.50.710 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 39.0 | 3.93e-01 | 74.5% | 66.7% |
| 1sb2B00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.60 | 50.0 | 3.95e-01 | 98.2% | 73.4% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.60 | 49.0 | 4.29e-01 | 98.2% | 91.3% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 50.0 | 3.66e-01 | 100.0% | 41.7% |
| 4ebgA00 | 3.10.450.560 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 50.0 | 4.24e-01 | 100.0% | 75.3% |
| 5jmfA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 49.0 | 3.19e-01 | 100.0% | 49.4% |
| 2kjpA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 40.0 | 3.64e-01 | 78.2% | 87.3% |
| 4o2tA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 42.0 | 3.12e-01 | 87.3% | 79.2% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.56 | 44.0 | 3.68e-01 | 89.1% | 81.2% |
| 4jj0B00 | 2.30.42.60 | Mainly Beta › Roll › Pdz3 Domain › | 0.56 | 46.0 | 3.21e-01 | 90.9% | 53.3% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.56 | 46.0 | 3.58e-01 | 98.2% | 73.1% |
| 5bukB00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 46.0 | 2.74e-01 | 94.5% | 38.7% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 39.0 | 3.87e-01 | 78.2% | 84.2% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.55 | 39.0 | 2.80e-01 | 76.4% | 73.2% |
| 3t2lA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.43e-01 | 98.2% | 87.0% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 43.0 | 2.81e-01 | 96.4% | 28.7% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 40.0 | 2.92e-01 | 89.1% | 44.6% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.54 | 41.0 | 3.38e-01 | 94.5% | 41.7% |
| 7jptA01 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.53 | 42.0 | 3.44e-01 | 98.2% | 80.5% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.53 | 45.0 | 4.14e-01 | 100.0% | 78.9% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 40.0 | 3.33e-01 | 87.3% | 58.3% |
| 2kksA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.53 | 43.0 | 3.24e-01 | 94.5% | 91.1% |
| 4fnvA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 40.0 | 2.65e-01 | 89.1% | 57.4% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 35.0 | 3.69e-01 | 72.7% | 97.9% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 37.0 | 3.02e-01 | 87.3% | 38.7% |
| 6j8yC00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 41.0 | 2.76e-01 | 92.7% | 36.9% |
| 2oz4A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.14e-01 | 72.7% | 67.5% |
| 5itqA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.51 | 41.0 | 3.34e-01 | 100.0% | 87.9% |
| 1tgjA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 42.0 | 3.39e-01 | 92.7% | 78.6% |
| 7vljA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 36.0 | 3.13e-01 | 76.4% | 91.4% |
| 2ivdB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 40.0 | 3.00e-01 | 96.4% | 51.2% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924975 | 4.1.1.377 ↗ | beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like | 0.72 | 63.0 | 5.60e-01 | 100.0% | 75.0% |
| 5041097 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.70 | 49.0 | 4.91e-01 | 74.5% | 92.7% |
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.68 | 58.0 | 5.27e-01 | 96.4% | 70.7% |
| 4879215 | 3270.1.1.1 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 | 0.67 | 54.0 | 4.50e-01 | 89.1% | 76.8% |
| 4024735 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.66 | 51.0 | 4.69e-01 | 83.6% | 74.3% |
| 4550958 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 48.0 | 3.78e-01 | 78.2% | 46.9% |
| 3390821 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 46.0 | 4.14e-01 | 76.4% | 65.0% |
| 4528719 | 4.1.1.438 ↗ | beta barrels › SH3 › SH3 › SH3 › PF27440 | 0.65 | 51.0 | 4.87e-01 | 87.3% | 83.1% |
| 3501491 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 52.0 | 4.03e-01 | 94.5% | 76.3% |
| 5035671 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.64 | 46.0 | 3.67e-01 | 76.4% | 50.5% |
| 4519674 | 4.1.1.186 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5397 | 0.63 | 52.0 | 5.14e-01 | 96.4% | 87.9% |
| 4975478 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.63 | 55.0 | 4.77e-01 | 98.2% | 85.9% |
| 4051997 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.63 | 45.0 | 3.51e-01 | 76.4% | 41.7% |
| 3408588 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.63 | 48.0 | 4.53e-01 | 85.5% | 74.3% |
| 3387994 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.63 | 44.0 | 3.90e-01 | 74.5% | 62.5% |
| 3840290 | 2.1.1.22 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN | 0.62 | 43.0 | 3.61e-01 | 74.5% | 64.6% |
| 4031803 | 2.4.1.10 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE,OB_MalK | 0.62 | 44.0 | 3.36e-01 | 76.4% | 43.8% |
| 3481102 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 42.0 | 3.37e-01 | 76.4% | 44.8% |
| 3516145 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 43.0 | 3.83e-01 | 76.4% | 71.2% |
| 3937603 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.60 | 51.0 | 4.05e-01 | 100.0% | 56.7% |
| 3397568 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.60 | 46.0 | 3.10e-01 | 87.3% | 77.3% |
| 4963635 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.59 | 43.0 | 4.04e-01 | 80.0% | 68.1% |
| 5030870 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.58 | 45.0 | 3.90e-01 | 87.3% | 57.8% |
| 3924493 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.58 | 43.0 | 3.63e-01 | 80.0% | 69.5% |
| 3324949 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 40.0 | 3.36e-01 | 74.5% | 69.5% |
| 4002646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 45.0 | 2.99e-01 | 92.7% | 48.8% |
| 3821607 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.56 | 46.0 | 2.93e-01 | 100.0% | 38.8% |
| 5031873 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 46.0 | 3.56e-01 | 100.0% | 69.7% |
| 5052119 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.56 | 43.0 | 3.00e-01 | 89.1% | 27.3% |
| 3909386 | 3504.2.1.1 ↗ | beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco | 0.56 | 46.0 | 3.59e-01 | 100.0% | 87.9% |
| 5025601 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.56 | 43.0 | 2.71e-01 | 89.1% | 24.9% |
| 3497175 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 48.0 | 3.04e-01 | 100.0% | 26.8% |
| 3380327 | 5.1.10.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › WD40_RFWD3 | 0.55 | 46.0 | 3.83e-01 | 100.0% | 53.0% |
| 3993689 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.55 | 43.0 | 4.02e-01 | 92.7% | 84.0% |
| 3699932 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.55 | 37.0 | 2.44e-01 | 70.9% | 17.6% |
| 4010838 | 7000.1.1.1 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605 | 0.55 | 43.0 | 3.18e-01 | 87.3% | 78.6% |
| 3659202 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.55 | 38.0 | 3.42e-01 | 80.0% | 51.2% |
| None | — | 0.54 | 45.0 | 2.98e-01 | 100.0% | 43.9% | |
| 4937130 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.52 | 40.0 | 3.84e-01 | 98.2% | 73.8% |
| 4538466 | 3197.1.1.1 ↗ | a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N | 0.52 | 41.0 | 3.26e-01 | 92.7% | 49.2% |
| 3479914 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.52 | 36.0 | 3.21e-01 | 74.5% | 72.9% |
| 3695979 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 41.0 | 3.35e-01 | 94.5% | 59.8% |
| 4545857 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.52 | 43.0 | 3.04e-01 | 100.0% | 74.4% |
| 4651440 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.51 | 42.0 | 3.44e-01 | 94.5% | 98.2% |
| 4055020 | 222.1.1.25 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ChapFlgA_N | 0.51 | 42.0 | 3.85e-01 | 94.5% | 81.3% |
| 3838343 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 3.57e-01 | 94.5% | 89.5% |
| 3964724 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.50 | 40.0 | 3.10e-01 | 98.2% | 41.3% |