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PHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00402

Bact-Vir

PHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00402

Identity

Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-85
PDB
Domain cluster: rep: cathepsin__YP_006607808__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D59-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00112.30 best Peptidase_C1 38.3 2.20e-09 91.5% 35.4%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.88 83.0 5.96e-01 100.0% 44.9%
5fpwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.87 82.0 5.43e-01 100.0% 31.5%
6zq3A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.82 77.0 5.52e-01 100.0% 43.8%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.81 76.0 4.72e-01 100.0% 28.2%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.80 75.0 4.67e-01 100.0% 28.4%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.78 72.0 4.63e-01 100.0% 32.9%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.74 48.0 5.26e-01 79.3% 79.7%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.73 58.0 4.24e-01 100.0% 32.9%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 63.0 4.84e-01 100.0% 48.6%
4w79A00 3.10.620.10 Alpha Beta › Roll › C8orf32 fold › Protein N-terminal glutamine amidohydrolase, alpha beta roll 0.57 48.0 3.60e-01 91.5% 44.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3277753 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.89 84.0 5.73e-01 100.0% 35.7%
3234755 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 77.0 5.39e-01 100.0% 38.6%
3723538 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.82 77.0 5.01e-01 100.0% 32.6%
3401763 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.82 77.0 5.35e-01 100.0% 37.8%
4978411 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.70 63.0 4.84e-01 100.0% 48.3%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.56e-01 100.0% 87.1%
3713613 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.77e-01 86.6% 93.8%
3310575 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 54.0 4.99e-01 96.3% 79.0%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.60 49.0 3.40e-01 87.8% 32.3%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.58 52.0 4.19e-01 100.0% 85.0%
3782999 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.57 50.0 4.19e-01 100.0% 64.8%
3853422 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 47.0 4.33e-01 100.0% 72.4%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.55e-01 100.0% 79.0%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 48.0 4.20e-01 100.0% 70.0%
3597364 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 49.0 3.22e-01 100.0% 24.1%
4517543 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 48.0 4.23e-01 100.0% 71.2%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 49.0 4.01e-01 100.0% 64.0%
4650682 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 47.0 4.10e-01 100.0% 66.9%
4943576 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.53 46.0 4.09e-01 100.0% 70.4%
4999914 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 45.0 3.98e-01 100.0% 70.0%
3710131 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.53 45.0 3.86e-01 100.0% 66.7%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 45.0 3.96e-01 100.0% 70.0%
4060749 2492.1.1.4 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.52 41.0 2.83e-01 89.0% 52.3%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.52 45.0 3.97e-01 100.0% 68.8%
3704470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 41.0 3.56e-01 95.1% 81.4%