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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00015
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00015
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 108-160_186-241
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14393.12 best | DUF4422 | 32.4 | 1.20e-07 | 99.1% | 45.9% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 30.0 | 4.00e-01 | 96.3% | 84.2% |
| 2x49A03 | 1.10.8.540 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 | 0.58 | 36.0 | 3.86e-01 | 97.2% | 73.3% |
| 1hdlA00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 28.0 | 3.63e-01 | 100.0% | 98.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3652237 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.59 | 36.0 | 3.32e-01 | 100.0% | 46.4% |
| 3467700 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 39.0 | 3.83e-01 | 89.9% | 62.6% |
| 4995709 | 159.1.1.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 | 0.59 | 31.0 | 3.41e-01 | 96.3% | 60.0% |
| 3936200 | 524.1.1.0 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p | 0.53 | 36.0 | 3.05e-01 | 89.0% | 42.3% |
| 4618832 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 39.0 | 3.74e-01 | 90.8% | 69.6% |
| 3163613 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 33.0 | 3.88e-01 | 72.5% | 100.0% |
| 4099141 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.51 | 35.0 | 3.18e-01 | 89.0% | 50.3% |
| 2670445 | 191.1.1.47 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_45 | 0.51 | 39.0 | 4.12e-01 | 89.0% | 95.7% |
| 4852268 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.51 | 33.0 | 3.50e-01 | 93.6% | 73.5% |
| 3600875 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.50 | 38.0 | 2.95e-01 | 82.6% | 79.6% |
D2
medium
residues 1-105_161-185_242-255
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14393.12 best | DUF4422 | 85.5 | 6.70e-24 | 72.9% | 50.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1foaA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.73 | 66.0 | 5.73e-01 | 97.2% | 100.0% |
| 6wmnD01 | 3.90.550.50 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.72 | 67.0 | 5.21e-01 | 100.0% | 76.3% |
| 7d73A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.72 | 63.0 | 5.35e-01 | 94.4% | 100.0% |
| 3brkX01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.71 | 66.0 | 5.28e-01 | 99.3% | 93.3% |
| 1qg8A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.70 | 64.0 | 5.36e-01 | 97.9% | 89.5% |
| 4p02A02 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.70 | 64.0 | 5.32e-01 | 98.6% | 95.9% |
| 7zvjA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.70 | 62.0 | 5.18e-01 | 97.2% | 95.6% |
| 1g9rA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.68 | 60.0 | 4.84e-01 | 96.5% | 91.3% |
| 2j0aA00 | 3.90.550.50 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.67 | 62.0 | 5.17e-01 | 100.0% | 85.2% |
| 3tztA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.66 | 59.0 | 5.07e-01 | 99.3% | 92.2% |
| 2nxvA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.61 | 55.0 | 4.63e-01 | 96.5% | 81.1% |
| 3k2hA01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.55 | 37.0 | 3.38e-01 | 100.0% | 51.9% |
| 3vpaB00 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.53 | 46.0 | 3.70e-01 | 95.1% | 61.4% |
| 2pn1A01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 37.0 | 3.94e-01 | 95.1% | 84.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3308635 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.84 | 77.0 | 5.93e-01 | 95.8% | 81.4% |
| 3892203 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.74 | 69.0 | 5.06e-01 | 99.3% | 69.9% |
| 3897139 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.74 | 68.0 | 5.03e-01 | 99.3% | 70.3% |
| 3676950 | 7516.1.1.52 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans | 0.74 | 69.0 | 5.26e-01 | 100.0% | 82.6% |
| 3833723 | 7516.1.1.52 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans | 0.74 | 69.0 | 5.15e-01 | 100.0% | 77.2% |
| 3761668 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.73 | 68.0 | 5.15e-01 | 100.0% | 76.3% |
| 3416293 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.73 | 68.0 | 5.28e-01 | 100.0% | 78.7% |
| 3243577 | 7516.1.1.112 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe, CHGN | 0.73 | 67.0 | 5.31e-01 | 99.3% | 81.3% |
| 3903433 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.73 | 68.0 | 5.04e-01 | 100.0% | 82.9% |
| 3875039 | 7516.1.1.84 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_54 | 0.73 | 68.0 | 5.42e-01 | 99.3% | 79.3% |
| 3494566 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.73 | 67.0 | 5.23e-01 | 99.3% | 86.3% |
| 3272064 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.73 | 67.0 | 4.95e-01 | 99.3% | 79.2% |
| 3517143 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.73 | 67.0 | 5.38e-01 | 100.0% | 90.8% |
| 3880958 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.73 | 67.0 | 5.22e-01 | 99.3% | 81.0% |
| 3903241 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.72 | 66.0 | 5.07e-01 | 99.3% | 77.5% |
| 3274546 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.71 | 65.0 | 4.28e-01 | 98.6% | 43.0% |
| 3585272 | 7516.1.1.8 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T | 0.71 | 66.0 | 5.10e-01 | 100.0% | 83.0% |
| 3618405 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.71 | 65.0 | 5.26e-01 | 99.3% | 90.0% |
| 3934140 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.71 | 65.0 | 4.69e-01 | 100.0% | 71.0% |
| 3455778 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.71 | 64.0 | 5.13e-01 | 98.6% | 96.1% |
| 3239160 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.70 | 64.0 | 4.66e-01 | 100.0% | 71.9% |
| 3315303 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.70 | 64.0 | 5.18e-01 | 100.0% | 84.8% |
| 3691895 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.70 | 64.0 | 4.17e-01 | 99.3% | 82.5% |
| 3829835 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.70 | 63.0 | 4.89e-01 | 99.3% | 87.9% |
| 3432410 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.69 | 63.0 | 4.72e-01 | 98.6% | 80.9% |
| 4117130 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.69 | 64.0 | 5.62e-01 | 98.6% | 95.6% |
| 3495524 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.69 | 63.0 | 5.38e-01 | 100.0% | 92.7% |
| 3181975 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.69 | 64.0 | 4.80e-01 | 99.3% | 91.8% |
| 3361310 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.69 | 57.0 | 4.88e-01 | 87.5% | 93.3% |
| 5033331 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.69 | 63.0 | 5.21e-01 | 97.9% | 75.8% |
| 4932869 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.69 | 63.0 | 4.39e-01 | 99.3% | 74.9% |
| 3382088 | 7516.1.1.35 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch | 0.69 | 57.0 | 5.29e-01 | 89.6% | 100.0% |
| 3285514 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.68 | 61.0 | 4.97e-01 | 97.2% | 90.6% |
| 3955005 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.66 | 60.0 | 4.97e-01 | 98.6% | 78.8% |
| 4938025 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.66 | 59.0 | 4.80e-01 | 96.5% | 89.2% |
| 3216721 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.64 | 58.0 | 5.15e-01 | 98.6% | 100.0% |
| 3466374 | 7516.1.1.7 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › UDPGP | 0.59 | 51.0 | 4.19e-01 | 91.7% | 76.4% |
| 5012331 | 7518.1.1.7 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › DacZ_T | 0.59 | 36.0 | 4.15e-01 | 76.4% | 86.0% |
| 5067350 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.56 | 36.0 | 4.14e-01 | 80.6% | 90.5% |
| 3225471 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.51 | 35.0 | 3.97e-01 | 93.1% | 96.2% |