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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00033
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00033
Identity
- Kingdom:
- phage
Quality
64.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 261-317
Domain cluster:
rep: SRR1747065_scaffold_5_prodigal-single.1__X__X__00020__D265-326
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 58.0 | 4.53e-01 | 98.2% | 55.6% |
| 1ayaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 55.0 | 4.59e-01 | 96.5% | 62.4% |
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 49.0 | 3.67e-01 | 91.2% | 33.3% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 51.0 | 5.15e-01 | 93.0% | 94.6% |
| 1milA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 53.0 | 4.38e-01 | 96.5% | 56.7% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 49.0 | 3.48e-01 | 98.2% | 66.2% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 50.0 | 3.61e-01 | 98.2% | 34.5% |
| 2g8lA03 | 3.40.50.10880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 | 0.58 | 40.0 | 3.08e-01 | 75.4% | 94.0% |
| 1h2eA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 46.0 | 3.36e-01 | 100.0% | 73.9% |
| 4ij5A00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.58 | 47.0 | 3.36e-01 | 100.0% | 72.0% |
| 4awyB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 43.0 | 2.82e-01 | 84.2% | 54.4% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 47.0 | 3.45e-01 | 100.0% | 45.5% |
| 4e5sA02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.57 | 39.0 | 2.87e-01 | 73.7% | 81.8% |
| 6u10A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 43.0 | 2.80e-01 | 84.2% | 37.9% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.56 | 44.0 | 3.32e-01 | 96.5% | 86.4% |
| 2opjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 41.0 | 3.61e-01 | 100.0% | 52.3% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 37.0 | 3.51e-01 | 96.5% | 56.5% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 42.0 | 2.77e-01 | 84.2% | 54.0% |
| 1q90C00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 42.0 | 3.39e-01 | 87.7% | 85.7% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 43.0 | 3.22e-01 | 96.5% | 63.1% |
| 6e4bA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 44.0 | 3.19e-01 | 100.0% | 74.9% |
| 3s9xA00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.53 | 42.0 | 3.18e-01 | 93.0% | 81.1% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.53 | 42.0 | 3.17e-01 | 100.0% | 70.8% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 41.0 | 3.43e-01 | 89.5% | 57.8% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.53 | 37.0 | 3.48e-01 | 80.7% | 60.9% |
| 2b5nB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.82e-01 | 100.0% | 76.0% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 43.0 | 2.74e-01 | 100.0% | 64.0% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 42.0 | 3.61e-01 | 98.2% | 80.2% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 3.06e-01 | 77.2% | 76.2% |
| 1nrkA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.51 | 36.0 | 3.27e-01 | 82.5% | 52.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3907501 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 58.0 | 3.65e-01 | 98.2% | 34.3% |
| 5016546 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 50.0 | 4.59e-01 | 82.5% | 73.3% |
| 3514017 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 57.0 | 4.53e-01 | 96.5% | 48.7% |
| 3598090 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.66 | 55.0 | 4.40e-01 | 93.0% | 61.7% |
| 3625308 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 55.0 | 4.35e-01 | 96.5% | 49.6% |
| 3993882 | 4.1.1.103 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12 | 0.65 | 48.0 | 5.04e-01 | 80.7% | 100.0% |
| 3512824 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.65 | 55.0 | 4.55e-01 | 96.5% | 59.0% |
| 3999963 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.65 | 55.0 | 4.25e-01 | 96.5% | 48.5% |
| 4927153 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.65 | 43.0 | 4.38e-01 | 78.9% | 70.9% |
| 3220873 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.64 | 54.0 | 4.56e-01 | 96.5% | 62.0% |
| 4887266 | 2492.1.1.42 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg | 0.64 | 54.0 | 3.95e-01 | 96.5% | 65.9% |
| 4312009 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 52.0 | 4.90e-01 | 91.2% | 97.1% |
| 3505477 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.64 | 53.0 | 3.71e-01 | 96.5% | 61.0% |
| 4558844 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.63 | 50.0 | 4.89e-01 | 91.2% | 96.9% |
| 3515280 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.63 | 44.0 | 4.86e-01 | 84.2% | 93.3% |
| 4963130 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 53.0 | 3.17e-01 | 100.0% | 38.5% |
| 3624597 | 214.1.1.9 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7063 | 0.62 | 52.0 | 4.40e-01 | 96.5% | 62.0% |
| 4970996 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.62 | 50.0 | 4.50e-01 | 89.5% | 88.7% |
| 3502261 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.62 | 52.0 | 3.95e-01 | 93.0% | 45.9% |
| 3407610 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 53.0 | 4.22e-01 | 98.2% | 64.2% |
| 4991056 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.62 | 41.0 | 4.16e-01 | 78.9% | 70.9% |
| 4976813 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.62 | 53.0 | 3.99e-01 | 100.0% | 77.3% |
| 4178357 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 49.0 | 4.74e-01 | 89.5% | 95.4% |
| 3706713 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 49.0 | 2.90e-01 | 94.7% | 35.3% |
| 10472 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.58 | 46.0 | 3.36e-01 | 100.0% | 73.9% |
| 4928221 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 46.0 | 3.70e-01 | 93.0% | 83.9% |
| 4220398 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.58 | 35.0 | 2.53e-01 | 96.5% | 19.4% |
| 3267106 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 41.0 | 2.46e-01 | 82.5% | 19.0% |
| 3484308 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.55 | 44.0 | 2.65e-01 | 91.2% | 45.6% |
| 4131560 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.55 | 46.0 | 3.71e-01 | 98.2% | 81.7% |
| 369229 | 3535.1.1.1 ↗ | a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS | 0.54 | 44.0 | 3.59e-01 | 96.5% | 55.8% |
| 5016524 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 45.0 | 3.46e-01 | 98.2% | 70.3% |
| 3278279 | 300.1.1.12 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 | 0.54 | 39.0 | 2.73e-01 | 78.9% | 80.0% |
| 4137739 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.54 | 42.0 | 3.12e-01 | 98.2% | 58.5% |
| 4330204 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 42.0 | 4.14e-01 | 93.0% | 95.4% |
| 4013364 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 41.0 | 3.72e-01 | 94.7% | 87.8% |
| 3213451 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.53 | 42.0 | 2.99e-01 | 94.7% | 54.5% |
| 3260431 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.52 | 40.0 | 3.07e-01 | 98.2% | 59.5% |
| 3672185 | 304.59.1.4 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › GUB_WAK_bind | 0.52 | 36.0 | 2.54e-01 | 73.7% | 32.1% |
| 4025905 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 41.0 | 2.78e-01 | 91.2% | 95.7% |
| 7233 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.51 | 40.0 | 3.44e-01 | 96.5% | 64.5% |
D2
medium
residues 318-378