←Back to structures
PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00051
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00051
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-80
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cr4A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.73 | 62.0 | 4.97e-01 | 100.0% | 53.5% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.72 | 61.0 | 4.84e-01 | 100.0% | 47.0% |
| 2og4A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.71 | 59.0 | 3.81e-01 | 100.0% | 32.4% |
| 6wo0A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.70 | 57.0 | 3.74e-01 | 93.6% | 53.5% |
| 6qm7J00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.69 | 58.0 | 3.87e-01 | 100.0% | 41.2% |
| 3qwxX01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.69 | 57.0 | 4.49e-01 | 100.0% | 45.5% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.69 | 60.0 | 4.79e-01 | 100.0% | 89.5% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.69 | 56.0 | 3.84e-01 | 100.0% | 32.1% |
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.68 | 56.0 | 3.81e-01 | 100.0% | 43.4% |
| 2cs0A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 55.0 | 4.54e-01 | 100.0% | 48.4% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 53.0 | 3.44e-01 | 93.6% | 18.9% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.66 | 50.0 | 4.15e-01 | 87.2% | 64.1% |
| 3li9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 51.0 | 3.85e-01 | 91.5% | 40.3% |
| 1td6A02 | 3.30.1790.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein mp506/mpn330, domain 2 › hypothetical protein mp506/mpn330, domain 2 | 0.63 | 51.0 | 4.24e-01 | 97.9% | 57.6% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 51.0 | 3.95e-01 | 97.9% | 45.7% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.62 | 46.0 | 4.71e-01 | 83.0% | 88.6% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 49.0 | 4.46e-01 | 100.0% | 87.7% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 50.0 | 3.30e-01 | 100.0% | 38.6% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 52.0 | 4.05e-01 | 100.0% | 59.4% |
| 5xtsA03 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.61 | 50.0 | 3.83e-01 | 100.0% | 80.5% |
| 6l1kA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 49.0 | 3.36e-01 | 93.6% | 53.9% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 47.0 | 3.47e-01 | 87.2% | 41.8% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 40.0 | 3.72e-01 | 70.2% | 66.1% |
| 3weeB03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 48.0 | 3.63e-01 | 91.5% | 59.1% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 39.0 | 3.49e-01 | 70.2% | 57.4% |
| 1u0kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 46.0 | 3.54e-01 | 100.0% | 56.8% |
| 5yvrA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 45.0 | 3.10e-01 | 93.6% | 54.3% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 47.0 | 3.99e-01 | 100.0% | 58.0% |
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 50.0 | 4.30e-01 | 100.0% | 65.8% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.57 | 51.0 | 3.72e-01 | 100.0% | 83.1% |
| 1q7hA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.56 | 46.0 | 3.93e-01 | 100.0% | 80.2% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 44.0 | 3.14e-01 | 100.0% | 43.4% |
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.56 | 41.0 | 4.20e-01 | 100.0% | 95.7% |
| 6khjH01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.55 | 42.0 | 2.61e-01 | 95.7% | 75.7% |
| 3h09A04 | 4.10.1240.40 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.55 | 44.0 | 3.92e-01 | 93.6% | 87.5% |
| 1jcfA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 42.0 | 3.76e-01 | 93.6% | 64.5% |
| 3wbiA04 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 44.0 | 3.25e-01 | 100.0% | 55.2% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 41.0 | 3.21e-01 | 100.0% | 55.7% |
| 1cfyA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 40.0 | 3.11e-01 | 95.7% | 59.4% |
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 43.0 | 3.79e-01 | 97.9% | 61.6% |
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 39.0 | 2.23e-01 | 91.5% | 16.2% |
| 1f89A00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 39.0 | 2.62e-01 | 100.0% | 21.8% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.51 | 38.0 | 3.76e-01 | 80.9% | 100.0% |
| 4exoA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 41.0 | 3.02e-01 | 95.7% | 32.9% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 41.0 | 2.99e-01 | 100.0% | 45.2% |
| 3o2zP00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 36.0 | 2.82e-01 | 80.9% | 73.3% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978781 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.80 | 71.0 | 4.84e-01 | 100.0% | 37.5% |
| 3992660 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.75 | 63.0 | 4.89e-01 | 100.0% | 47.3% |
| 3890372 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.73 | 60.0 | 4.74e-01 | 100.0% | 43.6% |
| 158839 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.73 | 62.0 | 4.60e-01 | 100.0% | 42.1% |
| 3477642 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.71 | 59.0 | 4.47e-01 | 100.0% | 38.3% |
| 3310464 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.71 | 52.0 | 5.11e-01 | 93.6% | 76.0% |
| 5049198 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.70 | 59.0 | 4.15e-01 | 100.0% | 34.4% |
| 3233501 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.70 | 58.0 | 4.52e-01 | 100.0% | 41.7% |
| 4360499 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.70 | 59.0 | 4.55e-01 | 100.0% | 44.3% |
| 4015823 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.70 | 59.0 | 3.91e-01 | 100.0% | 42.4% |
| 3483784 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.69 | 58.0 | 4.59e-01 | 100.0% | 44.8% |
| 4954540 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.69 | 61.0 | 4.62e-01 | 100.0% | 90.9% |
| 5026836 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.69 | 46.0 | 4.07e-01 | 72.3% | 47.1% |
| 3875076 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.69 | 59.0 | 4.20e-01 | 100.0% | 33.1% |
| 3166788 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.69 | 55.0 | 3.21e-01 | 91.5% | 19.5% |
| 3626142 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.69 | 50.0 | 4.78e-01 | 78.7% | 87.3% |
| 3105889 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.68 | 57.0 | 3.90e-01 | 100.0% | 48.1% |
| 3624651 | 7528.1.1.5 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II | 0.68 | 59.0 | 4.40e-01 | 100.0% | 70.8% |
| 4032585 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.66 | 55.0 | 4.69e-01 | 100.0% | 56.5% |
| 5052929 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.66 | 54.0 | 3.68e-01 | 100.0% | 41.5% |
| 3682832 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.66 | 54.0 | 3.87e-01 | 97.9% | 41.3% |
| 4582116 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.66 | 58.0 | 5.20e-01 | 100.0% | 87.7% |
| 4973665 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 53.0 | 4.50e-01 | 95.7% | 75.3% |
| 1137984 | 7528.1.1.5 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II | 0.65 | 56.0 | 4.18e-01 | 100.0% | 73.8% |
| 3531794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.65 | 50.0 | 3.41e-01 | 87.2% | 31.9% |
| 3566431 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.65 | 52.0 | 4.83e-01 | 97.9% | 70.0% |
| 1487323 | 79.1.1.4 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PhageP22-tail | 0.64 | 49.0 | 3.78e-01 | 100.0% | 35.0% |
| 4013073 | 5089.1.1.0 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | 0.64 | 53.0 | 3.45e-01 | 100.0% | 73.3% |
| 3511641 | 7528.1.1.5 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › AMG1_II | 0.64 | 55.0 | 4.14e-01 | 100.0% | 75.0% |
| 3791417 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.63 | 48.0 | 4.92e-01 | 97.9% | 88.9% |
| 2440701 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.63 | 51.0 | 3.82e-01 | 95.7% | 46.6% |
| 3932900 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.62 | 50.0 | 3.47e-01 | 97.9% | 96.3% |
| 3250585 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.62 | 47.0 | 2.73e-01 | 89.4% | 17.0% |
| 3527717 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 45.0 | 4.46e-01 | 93.6% | 75.5% |
| 1100099 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.61 | 47.0 | 2.94e-01 | 95.7% | 57.7% |
| 4237407 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.61 | 51.0 | 3.24e-01 | 100.0% | 66.5% |
| 5036655 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 49.0 | 4.60e-01 | 93.6% | 73.3% |
| 4992195 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.60 | 51.0 | 4.80e-01 | 100.0% | 93.3% |
| 3839929 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.60 | 41.0 | 3.78e-01 | 72.3% | 66.7% |
| 3716884 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.60 | 51.0 | 2.97e-01 | 100.0% | 20.0% |
| 4144942 | 70.3.1.12 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 | 0.59 | 48.0 | 4.01e-01 | 93.6% | 90.6% |
| 3240076 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.59 | 50.0 | 4.55e-01 | 97.9% | 76.9% |
| 3242741 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.59 | 48.0 | 3.03e-01 | 93.6% | 24.3% |
| 5024532 | 70.3.1.12 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 | 0.59 | 49.0 | 4.11e-01 | 97.9% | 91.8% |
| 3888390 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 47.0 | 2.79e-01 | 91.5% | 84.0% |
| 3241447 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 47.0 | 3.61e-01 | 95.7% | 91.7% |
| 4196537 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.56 | 46.0 | 4.00e-01 | 97.9% | 58.7% |
| 3806561 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 46.0 | 4.16e-01 | 100.0% | 70.0% |
| 3478725 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 2.86e-01 | 100.0% | 32.3% |
| 3475647 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 47.0 | 3.01e-01 | 100.0% | 32.8% |
| 3251783 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.55 | 47.0 | 2.89e-01 | 100.0% | 94.3% |
| 3589383 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.53 | 48.0 | 3.45e-01 | 100.0% | 55.2% |
| 3172619 | 109.4.1.371 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTP1_C1 | 0.53 | 40.0 | 2.28e-01 | 91.5% | 17.7% |
| 3257888 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.53 | 45.0 | 3.22e-01 | 100.0% | 84.7% |
| 3521820 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.52 | 44.0 | 2.87e-01 | 100.0% | 30.2% |
| 3913334 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 41.0 | 3.61e-01 | 100.0% | 58.6% |
| 3616382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 44.0 | 4.15e-01 | 97.9% | 88.3% |
| 4231809 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.52 | 44.0 | 2.54e-01 | 100.0% | 94.1% |
| 4031833 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 36.0 | 3.46e-01 | 80.9% | 90.0% |
| 4602539 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.51 | 43.0 | 3.93e-01 | 97.9% | 87.3% |
| 3276080 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.50 | 38.0 | 2.35e-01 | 89.4% | 16.8% |
| 4089697 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.50 | 37.0 | 3.07e-01 | 80.9% | 50.0% |
| 3881119 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.50 | 38.0 | 3.26e-01 | 100.0% | 50.0% |
D2
medium
residues 88-137
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.78 | 58.0 | 6.14e-01 | 100.0% | 93.0% |
| 3i7fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 52.0 | 3.95e-01 | 100.0% | 75.0% |
| 3l1aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 50.0 | 3.44e-01 | 100.0% | 57.4% |
| 8fbcA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 40.0 | 2.45e-01 | 76.0% | 69.9% |
| 3ilvA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.57 | 46.0 | 3.04e-01 | 100.0% | 32.8% |
| 3rwlA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 38.0 | 2.33e-01 | 76.0% | 65.8% |
| 1io7A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 40.0 | 2.43e-01 | 80.0% | 70.8% |
| 1ze3D00 | 3.10.20.410 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain | 0.54 | 38.0 | 3.02e-01 | 80.0% | 33.6% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 38.0 | 2.31e-01 | 76.0% | 67.5% |
| 5h8iI00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.54 | 43.0 | 2.79e-01 | 100.0% | 24.9% |
| 4hjhB01 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.53 | 44.0 | 3.27e-01 | 100.0% | 50.0% |
| 5a6sA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 37.0 | 2.59e-01 | 100.0% | 19.6% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 38.0 | 2.30e-01 | 80.0% | 73.6% |
| 6p4wB01 | 3.40.91.30 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.52 | 38.0 | 3.05e-01 | 82.0% | 40.4% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.52 | 41.0 | 2.47e-01 | 98.0% | 77.6% |
| 3ejbB01 | 3.30.43.20 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › | 0.51 | 38.0 | 3.30e-01 | 82.0% | 51.8% |
| 2wiyA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 40.0 | 2.51e-01 | 100.0% | 76.9% |
| 5lhrA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 44.0 | 3.42e-01 | 100.0% | 76.1% |
| 1sjdB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 34.0 | 2.63e-01 | 70.0% | 35.9% |
| 4tpoA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 36.0 | 2.21e-01 | 76.0% | 68.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4136496 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.63 | 52.0 | 3.29e-01 | 100.0% | 27.9% |
| 3969133 | 311.1.1.0 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein | 0.62 | 48.0 | 3.67e-01 | 90.0% | 64.6% |
| 3580278 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.60 | 50.0 | 3.86e-01 | 100.0% | 43.2% |
| 3166033 | 311.1.1.0 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein | 0.58 | 48.0 | 3.69e-01 | 100.0% | 80.8% |
| 4539338 | 311.1.1.1 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 | 0.57 | 46.0 | 3.51e-01 | 100.0% | 74.8% |
| 3957630 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.57 | 40.0 | 2.40e-01 | 76.0% | 63.2% |
| 3600856 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.57 | 44.0 | 3.26e-01 | 86.0% | 77.6% |
| 3926830 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 47.0 | 3.77e-01 | 100.0% | 47.3% |
| 4623213 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.55 | 44.0 | 3.01e-01 | 100.0% | 23.4% |
| 3600705 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 44.0 | 3.39e-01 | 100.0% | 72.4% |
| 3630322 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 42.0 | 2.48e-01 | 90.0% | 50.7% |
| 3999421 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.55 | 43.0 | 2.55e-01 | 90.0% | 42.6% |
| 3368919 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.54 | 39.0 | 2.38e-01 | 82.0% | 71.4% |
| 3484916 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.54 | 42.0 | 3.22e-01 | 90.0% | 47.7% |
| 3723169 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 43.0 | 2.60e-01 | 92.0% | 89.0% |
| 3979716 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.53 | 44.0 | 3.19e-01 | 100.0% | 47.7% |
| 3615546 | 229.1.1.10 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › PF29595 | 0.52 | 39.0 | 3.30e-01 | 86.0% | 73.7% |
| 3744737 | 2006.1.4.29 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN-like_DDX60 | 0.52 | 41.0 | 2.72e-01 | 92.0% | 31.6% |
| 3412949 | 101.1.2.651 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29595 | 0.51 | 40.0 | 3.46e-01 | 86.0% | 80.0% |
| 4382069 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.50 | 39.0 | 2.70e-01 | 100.0% | 20.8% |
| 3857417 | 1.1.2.42 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PF29595 | 0.50 | 39.0 | 3.48e-01 | 86.0% | 82.7% |
| 3750756 | 101.1.4.70 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pecanex_C | 0.50 | 37.0 | 2.44e-01 | 82.0% | 17.4% |
| 3595554 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.50 | 39.0 | 2.69e-01 | 92.0% | 32.7% |
| 3228503 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.50 | 36.0 | 2.82e-01 | 84.0% | 98.5% |