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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00084

Bact-Vir

PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00084

Identity

Kingdom:
phage

Quality

74.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-72
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 51.0 4.31e-01 95.5% 78.4%
1zbrA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.58 49.0 3.20e-01 100.0% 56.3%
1pfkA02 3.40.50.460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain 0.58 39.0 3.24e-01 70.1% 78.6%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 37.0 3.08e-01 97.0% 35.2%
4tpsD00 3.30.300.180 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain 0.52 42.0 3.91e-01 88.1% 96.4%
3pdiA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 35.0 2.75e-01 73.1% 45.5%
4alzA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 4.21e-01 97.0% 96.9%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.51 42.0 4.09e-01 98.5% 97.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.56 33.0 3.65e-01 74.6% 76.0%
5028518 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.55 47.0 4.75e-01 95.5% 98.5%
5050963 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.54 46.0 4.70e-01 100.0% 100.0%
5045447 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.54 47.0 4.64e-01 95.5% 92.9%
4978220 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.54 44.0 4.52e-01 98.5% 96.9%
5023492 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.53 45.0 4.53e-01 95.5% 97.1%
5012299 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.52 44.0 4.41e-01 98.5% 97.1%
5013854 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.52 41.0 3.57e-01 88.1% 95.2%
4994961 327.11.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.51 42.0 3.89e-01 98.5% 70.0%
4652200 327.10.1.11 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DNA_pol3_a_NII 0.50 42.0 4.01e-01 100.0% 96.5%
4046434 327.10.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.50 45.0 4.15e-01 100.0% 94.1%