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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00105

Bact-Vir

PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00105

Identity

Kingdom:
phage

Quality

56.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-115
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00113__D6-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20475.4 best DUF6717 62.5 6.90e-17 98.2% 95.7%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 33.0 4.07e-01 94.7% 82.1%
1vw3B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 31.0 3.40e-01 70.2% 57.0%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 32.0 4.01e-01 93.0% 82.1%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 32.0 4.23e-01 71.9% 96.6%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 33.0 4.17e-01 73.7% 96.9%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 32.0 3.37e-01 75.4% 57.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 32.0 4.02e-01 89.5% 98.4%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 35.0 3.56e-01 70.2% 61.5%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 31.0 3.60e-01 70.2% 78.7%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 3.88e-01 88.6% 91.5%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 4.16e-01 96.5% 98.8%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 3.83e-01 95.6% 91.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 29.0 3.70e-01 95.6% 100.0%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 29.0 3.49e-01 81.6% 90.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 36.0 3.55e-01 100.0% 67.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 29.0 3.66e-01 96.5% 98.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
421 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 33.0 3.92e-01 94.7% 75.3%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 33.0 4.01e-01 94.7% 81.4%
4457428 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.61 38.0 3.87e-01 98.2% 63.6%
3164388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 32.0 3.90e-01 95.6% 84.6%
3436255 2.1.1.29 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.59 34.0 4.07e-01 73.7% 85.3%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.59 33.0 4.13e-01 72.8% 93.8%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 35.0 3.88e-01 74.6% 76.4%
160497 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 29.0 3.46e-01 90.4% 71.8%
5016920 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.57 35.0 4.02e-01 74.6% 87.2%
4173773 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 34.0 3.90e-01 74.6% 82.1%
3974328 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.56 34.0 3.78e-01 74.6% 78.8%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.56 34.0 3.94e-01 74.6% 86.3%
4630148 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 34.0 3.34e-01 73.7% 56.8%
4994226 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 39.0 3.86e-01 78.1% 95.2%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 38.0 3.63e-01 76.3% 87.1%
3163776 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 38.0 3.74e-01 78.1% 91.5%
3659202 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 28.0 3.27e-01 80.7% 73.8%
4399266 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.52 37.0 3.76e-01 93.0% 73.9%
4325086 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.52 37.0 3.89e-01 73.7% 92.2%
5017342 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 38.0 3.67e-01 78.1% 88.1%
4268790 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 36.0 3.50e-01 72.8% 84.6%
4955709 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 37.0 3.73e-01 76.3% 92.5%
4436471 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 37.0 3.83e-01 73.7% 91.4%
4497599 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 36.0 3.70e-01 72.8% 93.3%
4123140 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 35.0 3.66e-01 72.8% 91.7%
4190130 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 36.0 3.98e-01 76.3% 93.3%
3387114 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.50 32.0 3.49e-01 76.3% 77.9%
D2 high residues 147-225
PDB