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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00129
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00129
Identity
- Kingdom:
- phage
Quality
66.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-125
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.75 | 67.0 | 5.80e-01 | 100.0% | 87.6% |
| 3luuA00 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.73 | 64.0 | 5.78e-01 | 100.0% | 84.3% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.70 | 49.0 | 4.05e-01 | 98.4% | 42.6% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 47.0 | 4.17e-01 | 74.6% | 52.9% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.66 | 58.0 | 5.74e-01 | 100.0% | 95.6% |
| 3a0oA03 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.64 | 57.0 | 3.73e-01 | 100.0% | 46.3% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 39.0 | 4.56e-01 | 81.0% | 100.0% |
| 2qc5A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 53.0 | 3.50e-01 | 100.0% | 21.5% |
| 2pm6D01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 53.0 | 3.54e-01 | 100.0% | 23.6% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.62 | 55.0 | 4.78e-01 | 100.0% | 66.0% |
| 3ei3B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 51.0 | 3.35e-01 | 100.0% | 19.3% |
| 4ci8A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 51.0 | 3.33e-01 | 100.0% | 19.6% |
| 2auwA01 | 3.30.2020.10 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain | 0.61 | 54.0 | 4.96e-01 | 100.0% | 81.7% |
| 2a6hC05 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 50.0 | 4.74e-01 | 93.7% | 88.0% |
| 2sliA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 3.73e-01 | 100.0% | 55.1% |
| 1xqaA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 38.0 | 3.17e-01 | 100.0% | 37.3% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 36.0 | 3.86e-01 | 71.4% | 70.9% |
| 1t6lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.59 | 50.0 | 3.39e-01 | 96.8% | 34.9% |
| 4geqB00 | 3.30.160.430 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 39.0 | 4.12e-01 | 98.4% | 75.9% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.58 | 45.0 | 3.12e-01 | 84.1% | 47.6% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 47.0 | 3.15e-01 | 100.0% | 27.7% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.56 | 37.0 | 3.98e-01 | 96.8% | 79.6% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 43.0 | 3.60e-01 | 100.0% | 47.7% |
| 6y48D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 43.0 | 2.83e-01 | 85.7% | 40.3% |
| 3bywC00 | 2.60.120.610 | Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain | 0.56 | 45.0 | 3.57e-01 | 100.0% | 40.0% |
| 1lwrA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.53e-01 | 77.8% | 84.4% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 36.0 | 3.45e-01 | 98.4% | 57.5% |
| 1wdjA00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.55 | 45.0 | 3.39e-01 | 100.0% | 68.8% |
| 2vz8A04 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.54 | 45.0 | 3.11e-01 | 96.8% | 40.2% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.54 | 40.0 | 3.25e-01 | 81.0% | 42.4% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 32.0 | 3.44e-01 | 100.0% | 67.9% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 41.0 | 3.17e-01 | 88.9% | 69.3% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.71e-01 | 92.1% | 86.1% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 45.0 | 3.86e-01 | 100.0% | 74.5% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 33.0 | 3.42e-01 | 73.0% | 70.7% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.52 | 44.0 | 3.75e-01 | 100.0% | 57.1% |
| 2mhdA00 | 2.40.128.370 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 3.77e-01 | 100.0% | 69.1% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.51 | 32.0 | 3.64e-01 | 96.8% | 93.0% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 47.0 | 3.90e-01 | 100.0% | 85.8% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.51 | 41.0 | 3.39e-01 | 96.8% | 48.9% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 2.68e-01 | 96.8% | 40.9% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 43.0 | 4.15e-01 | 95.2% | 91.8% |
| 1t3aA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.50 | 40.0 | 2.59e-01 | 100.0% | 80.5% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3242411 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.78 | 70.0 | 5.81e-01 | 100.0% | 80.9% |
| 3930660 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.77 | 69.0 | 5.98e-01 | 100.0% | 91.8% |
| 3601907 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.77 | 47.0 | 3.30e-01 | 95.2% | 21.2% |
| 3403184 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.74 | 65.0 | 5.56e-01 | 98.4% | 84.0% |
| 4195918 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.74 | 62.0 | 4.19e-01 | 100.0% | 24.5% |
| 3529118 | 5.1.4.111 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS6 | 0.72 | 64.0 | 3.88e-01 | 100.0% | 17.4% |
| 3396958 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.71 | 61.0 | 5.27e-01 | 98.4% | 86.0% |
| 3591459 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.69 | 48.0 | 4.36e-01 | 73.0% | 62.4% |
| 5023580 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.69 | 46.0 | 4.55e-01 | 96.8% | 66.2% |
| 3266967 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.68 | 59.0 | 3.57e-01 | 100.0% | 16.1% |
| 5027344 | 1170.1.1.0 ↗ | beta barrels › IL8-related › IL8-related › IL8 | 0.68 | 43.0 | 4.61e-01 | 100.0% | 74.5% |
| 3216286 | 5.1.3.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 | 0.68 | 59.0 | 4.11e-01 | 100.0% | 31.4% |
| 3592578 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.68 | 59.0 | 3.63e-01 | 100.0% | 19.2% |
| 4948490 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 43.0 | 4.06e-01 | 98.4% | 53.3% |
| 3403990 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.67 | 53.0 | 4.58e-01 | 88.9% | 78.6% |
| 4030393 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 47.0 | 2.66e-01 | 76.2% | 6.3% |
| 3927439 | 5.1.3.19 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira | 0.67 | 57.0 | 4.20e-01 | 98.4% | 36.0% |
| 4157389 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.67 | 46.0 | 4.62e-01 | 76.2% | 70.8% |
| 2985887 | 5.1.4.271 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 | 0.67 | 58.0 | 3.65e-01 | 100.0% | 18.9% |
| 3932473 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.66 | 57.0 | 3.53e-01 | 100.0% | 22.8% |
| 3392173 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.65 | 55.0 | 3.69e-01 | 98.4% | 23.6% |
| 3717633 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 56.0 | 3.43e-01 | 100.0% | 21.8% |
| 3724547 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.65 | 45.0 | 4.65e-01 | 77.8% | 76.7% |
| 4679970 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.65 | 39.0 | 3.30e-01 | 100.0% | 37.1% |
| 4025611 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 56.0 | 3.36e-01 | 100.0% | 15.7% |
| 3554713 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 55.0 | 3.36e-01 | 100.0% | 27.3% |
| 2087183 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 55.0 | 3.94e-01 | 100.0% | 31.8% |
| 3659251 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.64 | 54.0 | 3.63e-01 | 100.0% | 24.4% |
| 3953651 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.63 | 45.0 | 4.54e-01 | 77.8% | 74.6% |
| 3439990 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.63 | 48.0 | 4.24e-01 | 100.0% | 56.7% |
| 3595133 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 55.0 | 3.49e-01 | 100.0% | 18.6% |
| None | — | 0.63 | 53.0 | 3.37e-01 | 100.0% | 17.7% | |
| 3630631 | 5.1.4.327 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_MABP1-WDR62_2nd | 0.63 | 54.0 | 3.09e-01 | 100.0% | 9.3% |
| 3400963 | 5.1.4.648 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NUP159_NUP214, Beta-prop_VPS8 | 0.63 | 53.0 | 3.38e-01 | 100.0% | 18.0% |
| 4410540 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.63 | 53.0 | 4.83e-01 | 93.7% | 91.8% |
| 3940562 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.63 | 54.0 | 3.41e-01 | 100.0% | 18.9% |
| 3400787 | 5.1.4.408 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C | 0.63 | 48.0 | 2.88e-01 | 85.7% | 22.7% |
| 3575495 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.63 | 53.0 | 4.37e-01 | 100.0% | 52.0% |
| 3585623 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.62 | 53.0 | 4.24e-01 | 100.0% | 48.1% |
| 3416070 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 55.0 | 3.44e-01 | 100.0% | 24.5% |
| 5077602 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.62 | 51.0 | 3.36e-01 | 92.1% | 51.5% |
| 4995743 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.62 | 53.0 | 4.33e-01 | 96.8% | 90.8% |
| 3715297 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.61 | 52.0 | 4.65e-01 | 100.0% | 95.8% |
| 3585799 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.61 | 52.0 | 3.66e-01 | 100.0% | 29.8% |
| 3810782 | 5.1.5.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 | 0.61 | 52.0 | 3.32e-01 | 100.0% | 99.1% |
| 3300781 | 5.1.4.226 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 | 0.60 | 52.0 | 3.58e-01 | 98.4% | 44.5% |
| 3991453 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.60 | 51.0 | 3.57e-01 | 100.0% | 28.6% |
| 3680747 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 52.0 | 3.19e-01 | 100.0% | 25.9% |
| 4944335 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 38.0 | 3.34e-01 | 100.0% | 43.0% |
| 4891046 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.60 | 49.0 | 3.82e-01 | 100.0% | 39.1% |
| 3680446 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.60 | 48.0 | 3.80e-01 | 90.5% | 56.3% |
| 3511087 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.60 | 49.0 | 3.16e-01 | 100.0% | 17.2% |
| 4399722 | 1013.1.1.2 ↗ | beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 | 0.60 | 50.0 | 3.06e-01 | 98.4% | 22.7% |
| 3488001 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.59 | 50.0 | 3.27e-01 | 100.0% | 20.7% |
| 3914367 | 5.1.2.44 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_HPS5 | 0.59 | 50.0 | 3.91e-01 | 100.0% | 44.6% |
| 3992587 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.58 | 49.0 | 2.89e-01 | 100.0% | 10.5% |
| 4029690 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 51.0 | 2.84e-01 | 100.0% | 46.8% |
| 4864462 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 41.0 | 3.49e-01 | 73.0% | 45.1% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 38.0 | 4.39e-01 | 74.6% | 100.0% |
| 3700076 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.58 | 51.0 | 3.04e-01 | 96.8% | 86.0% |
| 5065184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 39.0 | 4.54e-01 | 92.1% | 100.0% |
| 3994170 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 48.0 | 3.53e-01 | 100.0% | 32.2% |
| 3272078 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 49.0 | 3.28e-01 | 100.0% | 23.2% |
| 5013774 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.57 | 45.0 | 3.29e-01 | 85.7% | 76.6% |
| 3740511 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.56 | 45.0 | 3.96e-01 | 100.0% | 60.0% |
| 4283788 | 2003.1.2.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 | 0.56 | 46.0 | 2.70e-01 | 90.5% | 68.4% |
| 3246415 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 45.0 | 3.77e-01 | 98.4% | 56.0% |
| 4144845 | 220.1.1.289 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › HdcB | 0.56 | 42.0 | 3.49e-01 | 81.0% | 60.0% |
| 3206852 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.55 | 40.0 | 2.73e-01 | 100.0% | 19.3% |
| 3376354 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.55 | 40.0 | 3.32e-01 | 77.8% | 92.2% |
| 3774120 | 4320.1.1.1 ↗ | alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 | 0.54 | 47.0 | 3.21e-01 | 98.4% | 89.6% |
| 4003728 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 45.0 | 3.04e-01 | 100.0% | 27.6% |
| 3676012 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.53 | 46.0 | 2.88e-01 | 96.8% | 80.3% |
| 3688428 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 47.0 | 3.12e-01 | 96.8% | 32.5% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 4.07e-01 | 88.9% | 83.3% |
| 5034643 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.53 | 47.0 | 4.16e-01 | 98.4% | 96.6% |
| 4230707 | 79.1.1.32 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › RHS_repeat, TEN_YD-shell | 0.53 | 43.0 | 2.75e-01 | 90.5% | 17.9% |
| 3729167 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 44.0 | 3.86e-01 | 98.4% | 92.0% |
| 3572103 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.52 | 45.0 | 3.52e-01 | 96.8% | 57.0% |
| 3614351 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.51 | 41.0 | 3.13e-01 | 95.2% | 38.3% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.50 | 45.0 | 2.72e-01 | 100.0% | 20.5% |
| 4143716 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.50 | 45.0 | 3.73e-01 | 100.0% | 64.5% |
D2
medium
residues 154-189_417-498
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 3.07e-01 | 78.0% | 68.3% |
| 3lbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 37.0 | 3.07e-01 | 77.1% | 64.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513421 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.62 | 32.0 | 4.25e-01 | 71.2% | 90.8% |
| 3579037 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 39.0 | 4.16e-01 | 74.6% | 70.5% |
| 5040467 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.54 | 39.0 | 3.08e-01 | 75.4% | 59.6% |
| 3385678 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.52 | 38.0 | 3.15e-01 | 77.1% | 65.2% |
| 4030408 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.52 | 38.0 | 3.09e-01 | 78.0% | 67.0% |
| 9354 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.51 | 38.0 | 3.10e-01 | 77.1% | 65.3% |
| 3891571 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.51 | 43.0 | 2.96e-01 | 91.5% | 48.6% |
| 3685990 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 38.0 | 3.26e-01 | 76.3% | 55.6% |
| 5079388 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 40.0 | 3.41e-01 | 81.4% | 92.6% |
| 4025734 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.51 | 40.0 | 3.31e-01 | 85.6% | 77.8% |
| 3964956 | 2003.1.5.153 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT, Methyltransf_25 | 0.51 | 38.0 | 3.07e-01 | 77.1% | 62.4% |
| 5000785 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 39.0 | 3.55e-01 | 83.9% | 94.1% |
| 3706713 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 41.0 | 2.80e-01 | 89.0% | 54.5% |
| None | — | 0.51 | 38.0 | 3.04e-01 | 77.1% | 61.9% | |
| 5070318 | 2003.1.5.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT | 0.51 | 37.0 | 3.06e-01 | 77.1% | 64.8% |
| None | — | 0.50 | 37.0 | 3.03e-01 | 77.1% | 63.4% | |
| 3830762 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 26.0 | 2.84e-01 | 71.2% | 58.9% |
D3
medium
residues 190-241_345-416
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.53 | 27.0 | 3.38e-01 | 83.9% | 86.2% |
| 4qlxB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 45.0 | 3.80e-01 | 95.2% | 86.2% |
| 2bwnB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 39.0 | 3.65e-01 | 87.1% | 62.9% |
| 3sz6A00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.60e-01 | 83.9% | 75.0% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 42.0 | 3.97e-01 | 90.3% | 96.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3677429 | 1.1.7.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin_2 | 0.58 | 32.0 | 3.61e-01 | 70.2% | 69.5% |
| 4929683 | 12.2.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain | 0.52 | 34.0 | 3.58e-01 | 83.1% | 72.7% |
D4
medium
residues 242-344
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2y8tA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.63 | 30.0 | 3.88e-01 | 94.2% | 81.8% |
| 1lv9A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 27.0 | 3.27e-01 | 100.0% | 79.7% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 3.46e-01 | 100.0% | 62.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080605 | 209.1.1.26 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Fib_succ_major | 0.82 | 65.0 | 5.10e-01 | 95.1% | 42.5% |
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.58 | 25.0 | 3.37e-01 | 78.6% | 76.0% |
| 3595994 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.52 | 31.0 | 2.94e-01 | 96.1% | 48.0% |
| 3389647 | 331.18.1.5 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › PTHB1_pf | 0.51 | 33.0 | 3.18e-01 | 94.2% | 54.4% |
| 3598298 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 29.0 | 3.60e-01 | 79.6% | 95.0% |
D5
medium
residues 499-603
Domain cluster:
representative