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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00165
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00165
Identity
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-131
Domain cluster:
rep: LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00035__D6-122
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.87 | 52.0 | 6.71e-01 | 77.4% | 100.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.82 | 52.0 | 4.84e-01 | 73.4% | 53.4% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.73 | 56.0 | 5.41e-01 | 79.8% | 92.7% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 50.0 | 4.61e-01 | 80.6% | 64.5% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.63 | 45.0 | 4.38e-01 | 73.4% | 89.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.62 | 48.0 | 4.55e-01 | 80.6% | 85.0% |
| 6a5gA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 38.0 | 3.69e-01 | 71.0% | 58.8% |
| 4ccvA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 35.0 | 3.69e-01 | 72.6% | 65.2% |
| 4j8tA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 32.0 | 3.23e-01 | 72.6% | 52.3% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.56 | 45.0 | 3.09e-01 | 84.7% | 67.3% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.07e-01 | 71.8% | 45.5% |
| 3f7xA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 34.0 | 3.34e-01 | 73.4% | 57.9% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 33.0 | 3.24e-01 | 75.0% | 53.9% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 33.0 | 3.70e-01 | 73.4% | 78.2% |
| 1uliB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 33.0 | 2.96e-01 | 74.2% | 42.9% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 39.0 | 3.63e-01 | 75.0% | 84.0% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 35.0 | 3.25e-01 | 74.2% | 53.5% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 34.0 | 3.16e-01 | 75.8% | 51.6% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.50 | 35.0 | 3.09e-01 | 71.8% | 50.3% |
| 3pg6B00 | 3.30.390.130 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 35.0 | 3.48e-01 | 72.6% | 68.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3951937 | 330.8.1.1 ↗ | a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like | 0.86 | 54.0 | 6.30e-01 | 77.4% | 87.6% |
| 3960733 | 330.8.1.1 ↗ | a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like | 0.81 | 50.0 | 6.06e-01 | 77.4% | 91.8% |
| 3806458 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.77 | 51.0 | 4.81e-01 | 75.8% | 57.2% |
| 3653604 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.76 | 47.0 | 4.31e-01 | 71.0% | 49.7% |
| 1070223 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.73 | 56.0 | 5.41e-01 | 79.8% | 92.7% |
| 3933957 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.68 | 54.0 | 4.97e-01 | 83.9% | 65.6% |
| 3173251 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.65 | 52.0 | 4.65e-01 | 83.9% | 68.2% |
| 3837957 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.65 | 49.0 | 4.28e-01 | 79.0% | 88.1% |
| 5034824 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 38.0 | 2.67e-01 | 70.2% | 18.3% |
| 5003221 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.58 | 35.0 | 3.68e-01 | 71.0% | 65.2% |
| 3429541 | 11.1.1.51 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 | 0.57 | 43.0 | 4.23e-01 | 77.4% | 84.6% |
| 3483174 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.57 | 43.0 | 2.92e-01 | 78.2% | 34.4% |
| 3249225 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.55 | 35.0 | 3.24e-01 | 76.6% | 48.8% |
| 135742 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.55 | 35.0 | 3.41e-01 | 73.4% | 56.5% |
| 3698279 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.55 | 36.0 | 3.35e-01 | 75.8% | 50.3% |
| 3290999 | 243.1.1.10 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL | 0.54 | 34.0 | 3.24e-01 | 72.6% | 53.1% |
| 3334482 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.54 | 37.0 | 3.30e-01 | 74.2% | 49.1% |
| 3385389 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.53 | 43.0 | 2.97e-01 | 85.5% | 66.0% |
| 4254680 | 7026.1.1.5 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › ATG2_CAD | 0.53 | 43.0 | 3.56e-01 | 86.3% | 92.9% |
| 3270444 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.53 | 38.0 | 3.37e-01 | 73.4% | 100.0% |
| 3646327 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 36.0 | 3.38e-01 | 73.4% | 54.4% |
| 4212620 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.52 | 37.0 | 3.75e-01 | 73.4% | 93.3% |