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PHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00320
Bact-VirPHAGE-A4--js4906-25-3_S22_scaffold_24_curated_closed_complete_prodigal-single.1__X__X__00320
Identity
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-104
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13619.12 best | KTSC | 26.1 | 7.90e-06 | 49.5% | 74.1% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.66 | 49.0 | 4.18e-01 | 77.7% | 69.1% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.64 | 47.0 | 4.03e-01 | 86.4% | 49.1% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.63 | 57.0 | 4.79e-01 | 100.0% | 65.5% |
| 6psyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 50.0 | 3.95e-01 | 89.3% | 78.0% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 46.0 | 3.19e-01 | 79.6% | 39.9% |
| 6x05A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 51.0 | 3.50e-01 | 100.0% | 87.0% |
| 5c2vB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 46.0 | 3.22e-01 | 88.3% | 38.1% |
| 3nvqA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.11e-01 | 91.3% | 47.9% |
| 4bg7A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 32.0 | 3.35e-01 | 71.8% | 59.2% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 40.0 | 3.61e-01 | 87.4% | 55.3% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 41.0 | 2.98e-01 | 79.6% | 36.2% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 37.0 | 3.60e-01 | 70.9% | 62.8% |
| 2oayA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 40.0 | 3.35e-01 | 79.6% | 92.2% |
| 3t8qB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 41.0 | 3.97e-01 | 81.6% | 98.3% |
| 1a87A01 | 3.30.1120.60 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin | 0.52 | 40.0 | 4.09e-01 | 99.0% | 85.6% |
| 4iikA00 | 3.60.40.20 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › | 0.52 | 46.0 | 3.31e-01 | 98.1% | 100.0% |
| 2wxwA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 39.0 | 3.38e-01 | 78.6% | 63.3% |
| 1jmoA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 39.0 | 3.45e-01 | 79.6% | 98.0% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.52 | 35.0 | 3.90e-01 | 82.5% | 91.0% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 35.0 | 3.35e-01 | 84.5% | 56.7% |
| 3ozqA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 38.0 | 3.27e-01 | 77.7% | 59.4% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 3.55e-01 | 78.6% | 64.4% |
| 2cn2A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.09e-01 | 100.0% | 92.3% |
| 6igbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 3.12e-01 | 100.0% | 87.1% |
| 2jkbA02 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.51 | 44.0 | 3.09e-01 | 100.0% | 91.4% |
| 3f1sA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 38.0 | 3.34e-01 | 78.6% | 96.7% |
| 2v95A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 39.0 | 3.63e-01 | 81.6% | 75.2% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.51 | 46.0 | 3.82e-01 | 100.0% | 93.3% |
| 2g30A02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 37.0 | 3.56e-01 | 76.7% | 89.7% |
| 1imvA01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 37.0 | 3.19e-01 | 78.6% | 86.4% |
| 1wz9A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 37.0 | 3.37e-01 | 78.6% | 97.9% |
| 5cxbA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 45.0 | 3.03e-01 | 98.1% | 63.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4501642 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.90 | 60.0 | 7.27e-01 | 73.8% | 100.0% |
| 4973393 | 3933.1.1.1 ↗ | a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC | 0.85 | 60.0 | 7.06e-01 | 73.8% | 100.0% |
| 3281348 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.71 | 57.0 | 5.79e-01 | 83.5% | 100.0% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.66 | 49.0 | 4.80e-01 | 77.7% | 82.7% |
| 3649148 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.62 | 40.0 | 3.53e-01 | 83.5% | 45.3% |
| 4025855 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 40.0 | 3.57e-01 | 86.4% | 47.6% |
| 3827738 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.60 | 41.0 | 4.01e-01 | 86.4% | 64.5% |
| 3178465 | 719.1.1.8 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF29965 | 0.59 | 43.0 | 4.16e-01 | 76.7% | 98.3% |
| 3933902 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 44.0 | 2.85e-01 | 81.6% | 64.8% |
| 3705072 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.58 | 44.0 | 4.23e-01 | 79.6% | 99.1% |
| 3996119 | 5.1.4.417 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N | 0.57 | 43.0 | 2.96e-01 | 79.6% | 53.2% |
| 3484308 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 48.0 | 3.11e-01 | 91.3% | 44.1% |
| 3605378 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.57 | 43.0 | 4.21e-01 | 78.6% | 99.1% |
| 3516608 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 42.0 | 2.78e-01 | 79.6% | 38.4% |
| 4927548 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.56 | 39.0 | 3.72e-01 | 85.4% | 61.7% |
| 3777718 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 50.0 | 2.96e-01 | 100.0% | 36.8% |
| 3938627 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.55 | 37.0 | 4.25e-01 | 84.5% | 94.7% |
| 3498580 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.55 | 49.0 | 3.28e-01 | 100.0% | 89.0% |
| 3538349 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.54 | 46.0 | 3.02e-01 | 95.1% | 54.9% |
| 4661496 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.54 | 44.0 | 2.77e-01 | 88.3% | 86.8% |
| 3876881 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 46.0 | 3.02e-01 | 95.1% | 56.9% |
| 3486078 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 3.20e-01 | 95.1% | 75.4% |
| 3550875 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.53 | 39.0 | 2.63e-01 | 77.7% | 43.5% |
| 3926057 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.53 | 47.0 | 3.34e-01 | 100.0% | 78.7% |
| 3865089 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.53 | 40.0 | 2.70e-01 | 79.6% | 50.3% |
| 3891226 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.52 | 39.0 | 2.67e-01 | 78.6% | 53.7% |
| 3480335 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.52 | 46.0 | 3.10e-01 | 98.1% | 96.5% |
| 3706741 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.52 | 44.0 | 3.40e-01 | 95.1% | 67.8% |
| 4647347 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.52 | 39.0 | 2.59e-01 | 78.6% | 53.3% |
| 3595807 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 3.09e-01 | 92.2% | 58.5% |
| 166524 | 4059.1.1.0 ↗ | a+b complex topology › Serpins › Serpins › Serpins | 0.51 | 39.0 | 2.64e-01 | 79.6% | 51.0% |
| 3749674 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 38.0 | 2.57e-01 | 78.6% | 51.5% |
| 3553901 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 38.0 | 2.53e-01 | 78.6% | 47.1% |
| 3853539 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 39.0 | 2.58e-01 | 79.6% | 50.9% |
| 3872729 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 38.0 | 2.61e-01 | 79.6% | 53.4% |
| 366580 | 4059.1.1.0 ↗ | a+b complex topology › Serpins › Serpins › Serpins | 0.51 | 38.0 | 2.55e-01 | 78.6% | 51.4% |
| 3744129 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.51 | 44.0 | 3.15e-01 | 95.1% | 57.0% |
| 3597662 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 45.0 | 3.04e-01 | 100.0% | 53.1% |
| 3841359 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.50 | 38.0 | 2.58e-01 | 79.6% | 53.0% |
| 3551648 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.50 | 37.0 | 2.52e-01 | 78.6% | 51.6% |
| 4983207 | 4041.1.1.0 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase | 0.50 | 43.0 | 3.57e-01 | 92.2% | 93.7% |
D2
high
residues 113-239
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00225__D2-167