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PHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00250
Bact-VirPHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00250
Identity
- Kingdom:
- phage
Quality
93.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-57
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.60 | 50.0 | 3.60e-01 | 100.0% | 73.2% |
| 5h0pA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 43.0 | 3.48e-01 | 77.8% | 88.2% |
| 3fwbA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 41.0 | 3.60e-01 | 79.6% | 89.0% |
| 3w1hA01 | 3.90.1150.110 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 48.0 | 3.34e-01 | 100.0% | 57.1% |
| 3hkoA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 45.0 | 3.09e-01 | 100.0% | 45.6% |
| 2m7lA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 38.0 | 3.31e-01 | 77.8% | 89.5% |
| 5ovnA03 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 44.0 | 3.74e-01 | 98.1% | 64.9% |
| 5cemA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 42.0 | 3.07e-01 | 94.4% | 33.5% |
| 4ie5A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.52 | 39.0 | 2.64e-01 | 87.0% | 71.6% |
| 1nndA01 | 3.10.10.10 | Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 0.52 | 41.0 | 3.59e-01 | 92.6% | 84.8% |
| 5xzwA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 44.0 | 3.32e-01 | 100.0% | 43.4% |
| 1qhbA00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.51 | 41.0 | 2.38e-01 | 94.4% | 65.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930538 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.56 | 46.0 | 2.92e-01 | 98.1% | 88.0% |
| 5027656 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.56 | 41.0 | 3.11e-01 | 81.5% | 92.1% |
| 4824669 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.55 | 38.0 | 3.50e-01 | 74.1% | 94.6% |
| None | — | 0.54 | 44.0 | 2.64e-01 | 100.0% | 12.5% | |
| 3585908 | 109.4.1.493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 | 0.53 | 41.0 | 2.34e-01 | 85.2% | 54.6% |
| 3547848 | 376.1.1.107 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_NSD | 0.50 | 39.0 | 3.52e-01 | 88.9% | 82.5% |
| 3847164 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.50 | 39.0 | 3.45e-01 | 88.9% | 83.5% |