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PHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00306
Bact-VirPHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00306
Identity
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-114
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.68 | 49.0 | 5.43e-01 | 100.0% | 98.6% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.68 | 57.0 | 5.88e-01 | 100.0% | 94.3% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 5.58e-01 | 100.0% | 93.9% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 50.0 | 5.35e-01 | 100.0% | 98.7% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.67e-01 | 98.9% | 77.6% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 39.0 | 4.59e-01 | 93.5% | 98.3% |
| 3zihA00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.63 | 40.0 | 4.31e-01 | 95.7% | 75.9% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 5.24e-01 | 100.0% | 98.8% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.60 | 37.0 | 4.09e-01 | 100.0% | 76.0% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.60 | 46.0 | 4.44e-01 | 87.0% | 72.1% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.59 | 29.0 | 3.73e-01 | 77.2% | 81.1% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 51.0 | 4.07e-01 | 95.7% | 50.6% |
| 2avdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 42.0 | 3.12e-01 | 92.4% | 31.5% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.58 | 30.0 | 3.60e-01 | 82.6% | 75.4% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 36.0 | 3.31e-01 | 79.3% | 47.5% |
| 3c8gD00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 41.0 | 3.44e-01 | 75.0% | 44.7% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.57 | 49.0 | 2.90e-01 | 95.7% | 31.6% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.56 | 42.0 | 3.89e-01 | 100.0% | 59.7% |
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.60e-01 | 100.0% | 87.0% |
| 2rqpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.24e-01 | 100.0% | 88.6% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 3.06e-01 | 89.1% | 38.2% |
| 4i4cB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 46.0 | 3.05e-01 | 98.9% | 59.8% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 40.0 | 2.64e-01 | 82.6% | 36.1% |
| 1oj7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 43.0 | 3.46e-01 | 96.7% | 83.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 41.0 | 3.75e-01 | 96.7% | 65.3% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 4.15e-01 | 100.0% | 84.2% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.50 | 35.0 | 3.77e-01 | 84.8% | 88.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3540079 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.73 | 36.0 | 3.87e-01 | 84.8% | 55.0% |
| 3786419 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 56.0 | 5.68e-01 | 98.9% | 97.8% |
| 3714579 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 42.0 | 4.24e-01 | 100.0% | 68.9% |
| 3661711 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.63 | 31.0 | 3.36e-01 | 82.6% | 52.5% |
| 3224625 | 101.1.2.374 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD | 0.63 | 44.0 | 4.70e-01 | 100.0% | 89.3% |
| 4339648 | 101.1.2.852 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27213 | 0.62 | 44.0 | 4.36e-01 | 98.9% | 71.6% |
| 5001357 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 48.0 | 4.73e-01 | 100.0% | 79.0% |
| 4028119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 42.0 | 4.63e-01 | 97.8% | 94.3% |
| 4988301 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.60 | 48.0 | 4.09e-01 | 85.9% | 92.7% |
| 3436659 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.60 | 35.0 | 3.62e-01 | 87.0% | 60.0% |
| 3265860 | 101.1.2.74 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cnd2 | 0.60 | 54.0 | 5.19e-01 | 100.0% | 94.2% |
| 5046869 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.59 | 40.0 | 4.26e-01 | 95.7% | 81.2% |
| 5030996 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 51.0 | 4.72e-01 | 100.0% | 82.5% |
| 5040967 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 4.01e-01 | 98.9% | 72.2% |
| 3721862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 4.83e-01 | 100.0% | 90.0% |
| 4941804 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.56 | 37.0 | 3.95e-01 | 95.7% | 78.8% |
| 3701431 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.56 | 44.0 | 3.75e-01 | 100.0% | 48.8% |
| 5030244 | 2003.1.5.60 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FmrO | 0.54 | 37.0 | 3.05e-01 | 96.7% | 37.6% |
| 4335728 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.53 | 42.0 | 4.03e-01 | 100.0% | 75.2% |
| 3679438 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.52 | 40.0 | 4.11e-01 | 100.0% | 85.6% |
| 5077194 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 40.0 | 3.75e-01 | 100.0% | 65.5% |
| 5040031 | 632.22.1.199 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PLDc_N | 0.51 | 37.0 | 3.82e-01 | 78.3% | 81.2% |
| 4636592 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.51 | 41.0 | 3.49e-01 | 85.9% | 57.2% |
| 4411010 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 44.0 | 3.88e-01 | 96.7% | 78.5% |