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PHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00362
Bact-VirPHAGE-A5--js4906-26-5_S28_scaffold_15_curated_closed_complete_prodigal-single.1__X__X__00362
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-70
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.75 | 52.0 | 3.46e-01 | 71.4% | 26.7% |
| 7xxiA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.73 | 65.0 | 4.26e-01 | 100.0% | 37.2% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.73 | 50.0 | 3.53e-01 | 71.4% | 24.0% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 51.0 | 4.80e-01 | 75.7% | 77.6% |
| 3nkzA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.70 | 47.0 | 4.27e-01 | 70.0% | 64.9% |
| 2i3fA00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.63 | 49.0 | 3.60e-01 | 87.1% | 76.2% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 50.0 | 4.98e-01 | 94.3% | 87.5% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 37.0 | 3.60e-01 | 75.7% | 54.3% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 49.0 | 4.24e-01 | 92.9% | 59.2% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 40.0 | 3.87e-01 | 70.0% | 100.0% |
| 2y51A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 45.0 | 3.10e-01 | 98.6% | 54.9% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 45.0 | 3.12e-01 | 100.0% | 56.8% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.53 | 38.0 | 3.29e-01 | 77.1% | 90.5% |
| 4hacB01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 42.0 | 3.17e-01 | 88.6% | 74.9% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.52 | 36.0 | 3.89e-01 | 80.0% | 86.2% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.50 | 37.0 | 2.98e-01 | 78.6% | 43.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3616267 | 4970.1.1.2 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A | 0.73 | 57.0 | 4.25e-01 | 84.3% | 78.2% |
| 3585028 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.70 | 55.0 | 4.86e-01 | 84.3% | 70.0% |
| 5078610 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.69 | 58.0 | 5.36e-01 | 92.9% | 92.2% |
| 5061328 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.69 | 54.0 | 5.40e-01 | 91.4% | 85.7% |
| 4230575 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.69 | 56.0 | 3.43e-01 | 92.9% | 64.3% |
| 4024467 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.65 | 54.0 | 4.32e-01 | 94.3% | 69.0% |
| 4323901 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.64 | 55.0 | 4.26e-01 | 98.6% | 71.5% |
| 4530474 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.61 | 45.0 | 4.37e-01 | 78.6% | 98.8% |
| 3696623 | 3352.1.1.21 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 | 0.61 | 50.0 | 3.07e-01 | 94.3% | 65.5% |
| 3631014 | 3352.1.1.21 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 | 0.60 | 51.0 | 3.18e-01 | 98.6% | 84.6% |
| 3192540 | 3352.1.1.21 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DIE2_ALG10 | 0.56 | 48.0 | 3.07e-01 | 98.6% | 87.2% |
| 4217340 | 605.1.1.131 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Val_tRNA-synt_C | 0.56 | 38.0 | 3.99e-01 | 70.0% | 83.3% |
| 3268175 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.51 | 39.0 | 3.92e-01 | 97.1% | 82.7% |
| 4041102 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.51 | 46.0 | 4.02e-01 | 100.0% | 72.4% |
| 5045083 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 42.0 | 3.19e-01 | 98.6% | 56.3% |
D2
medium
residues 71-131
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mzsA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 46.0 | 2.79e-01 | 85.2% | 38.5% |
| 3sbtB02 | 1.25.40.550 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Aar2, C-terminal domain-like | 0.59 | 49.0 | 3.81e-01 | 100.0% | 67.5% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 4.14e-01 | 100.0% | 88.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4681320 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.59 | 42.0 | 3.48e-01 | 77.0% | 87.0% |
| 4628544 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 42.0 | 3.45e-01 | 77.0% | 87.8% |
| 3781140 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 4.22e-01 | 100.0% | 58.1% |
| 4318194 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.56 | 41.0 | 3.43e-01 | 80.3% | 87.8% |
| 4242921 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.55 | 39.0 | 3.14e-01 | 77.0% | 79.2% |
| 3706306 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 47.0 | 3.82e-01 | 100.0% | 70.8% |
| 4296145 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 37.0 | 3.15e-01 | 77.0% | 90.9% |