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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00010
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00010
Identity
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 27-148
D2
medium
residues 179-228
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 50.0 | 4.25e-01 | 96.0% | 56.3% |
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 39.0 | 2.78e-01 | 72.0% | 21.3% |
| 4gu4A01 | 2.10.25.20 | Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 | 0.57 | 39.0 | 4.09e-01 | 88.0% | 86.0% |
| 6i7sG01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.55 | 44.0 | 2.89e-01 | 94.0% | 48.4% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.53 | 43.0 | 3.29e-01 | 94.0% | 75.8% |
| 2opwA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 35.0 | 2.23e-01 | 74.0% | 90.9% |
| 2z0lA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.50 | 39.0 | 2.48e-01 | 90.0% | 35.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974371 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.61 | 47.0 | 3.32e-01 | 96.0% | 81.5% |
| 3510752 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.58 | 39.0 | 3.76e-01 | 70.0% | 72.4% |
| 4180412 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.57 | 40.0 | 3.38e-01 | 76.0% | 81.1% |
| 3999543 | 5073.1.1.0 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M | 0.56 | 43.0 | 2.56e-01 | 98.0% | 54.1% |
| 5031362 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.55 | 37.0 | 3.58e-01 | 72.0% | 85.0% |
| 3266726 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 40.0 | 2.47e-01 | 84.0% | 45.2% |
| 4118384 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.53 | 43.0 | 2.85e-01 | 94.0% | 60.4% |
| 3268126 | 351.1.1.0 ↗ | few secondary structure elements › Leech antihemostatic protein › Leech antihemostatic protein › Leech antihemostatic protein | 0.52 | 35.0 | 3.58e-01 | 72.0% | 100.0% |
| 4965263 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 36.0 | 2.45e-01 | 76.0% | 25.0% |
| 3577271 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.52 | 34.0 | 3.28e-01 | 70.0% | 56.7% |
| 4993049 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.52 | 39.0 | 2.43e-01 | 86.0% | 55.7% |
| 4962675 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 35.0 | 2.24e-01 | 74.0% | 17.1% |
| 3578203 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.50 | 38.0 | 2.93e-01 | 94.0% | 34.7% |
| 3251511 | 391.1.2.8 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Dicty_CTDC | 0.50 | 36.0 | 3.01e-01 | 80.0% | 51.0% |
D3
medium
residues 328-445_872-925
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b9wA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.59 | 14.0 | 2.67e-01 | 95.3% | 66.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944045 | 4.17.1.2 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase | 0.63 | 13.0 | 2.08e-01 | 81.4% | 40.0% |
| 3490755 | 375.1.1.202 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A | 0.52 | 15.0 | 2.71e-01 | 84.9% | 92.5% |
| 4064579 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.51 | 17.0 | 2.03e-01 | 95.3% | 39.1% |