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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00048
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-103
Domain cluster:
rep: SRR1747065_scaffold_10_prodigal-single.1__X__X__00104__D12-75
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.65 | 52.0 | 5.00e-01 | 88.3% | 84.3% |
| 3kw2A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.63 | 49.0 | 5.12e-01 | 93.5% | 94.1% |
| 7oo1A02 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.61 | 44.0 | 3.84e-01 | 76.6% | 69.5% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 44.0 | 3.87e-01 | 76.6% | 68.5% |
| 2du7B03 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.30e-01 | 94.8% | 88.9% |
| 2du7A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.55e-01 | 94.8% | 85.1% |
| 3i9fB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 44.0 | 3.47e-01 | 81.8% | 79.9% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 47.0 | 3.27e-01 | 90.9% | 90.5% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 47.0 | 4.34e-01 | 97.4% | 69.0% |
| 2rhqB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 47.0 | 3.62e-01 | 94.8% | 90.7% |
| 1atiB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 47.0 | 3.26e-01 | 94.8% | 80.3% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 44.0 | 3.11e-01 | 87.0% | 70.5% |
| 5e5bA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.57 | 50.0 | 3.48e-01 | 98.7% | 63.5% |
| 1a49A01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.55 | 44.0 | 3.43e-01 | 89.6% | 67.0% |
| 3i7fB02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 44.0 | 2.96e-01 | 92.2% | 72.0% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.54 | 43.0 | 3.94e-01 | 90.9% | 79.8% |
| 1ac5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 44.0 | 2.76e-01 | 96.1% | 74.3% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 46.0 | 4.12e-01 | 97.4% | 75.2% |
| 3uk7A01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 37.0 | 2.86e-01 | 75.3% | 37.9% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.52 | 44.0 | 3.92e-01 | 94.8% | 78.8% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 41.0 | 3.48e-01 | 88.3% | 83.8% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.52 | 39.0 | 3.56e-01 | 84.4% | 71.6% |
| 2xgtA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 43.0 | 2.88e-01 | 94.8% | 80.9% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 39.0 | 3.16e-01 | 81.8% | 45.9% |
| 7mwzD01 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.50 | 39.0 | 3.06e-01 | 87.0% | 65.0% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.50 | 42.0 | 3.79e-01 | 94.8% | 81.7% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 40.0 | 3.05e-01 | 92.2% | 64.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3742193 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.64 | 53.0 | 3.48e-01 | 92.2% | 82.9% |
| 3723768 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 50.0 | 4.79e-01 | 94.8% | 80.0% |
| 4951499 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.59 | 43.0 | 4.34e-01 | 79.2% | 78.7% |
| 4207004 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.58 | 48.0 | 3.24e-01 | 94.8% | 86.3% |
| 4484391 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.58 | 46.0 | 4.00e-01 | 88.3% | 91.2% |
| 4972862 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 48.0 | 3.44e-01 | 94.8% | 78.4% |
| 4967639 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.58 | 48.0 | 3.23e-01 | 96.1% | 81.2% |
| 3431418 | 9.2.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N | 0.57 | 48.0 | 3.67e-01 | 94.8% | 72.1% |
| 3218512 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 50.0 | 4.51e-01 | 97.4% | 77.1% |
| 3212189 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 51.0 | 4.46e-01 | 98.7% | 72.2% |
| 3710799 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 42.0 | 2.65e-01 | 80.5% | 25.7% |
| 4566719 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.57 | 47.0 | 3.06e-01 | 96.1% | 70.6% |
| 3805401 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.57 | 49.0 | 3.52e-01 | 100.0% | 78.4% |
| 4985023 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.56 | 47.0 | 3.34e-01 | 96.1% | 73.8% |
| 3286009 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.55 | 41.0 | 3.83e-01 | 79.2% | 69.5% |
| 3650734 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 44.0 | 3.69e-01 | 92.2% | 62.1% |
| 5055137 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.55 | 46.0 | 3.83e-01 | 98.7% | 70.7% |
| 3253473 | 825.1.1.5 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › BB_PF | 0.54 | 46.0 | 3.33e-01 | 94.8% | 83.2% |
| 5072980 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.54 | 46.0 | 3.31e-01 | 97.4% | 88.5% |
| 3608988 | 241.4.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 | 0.53 | 45.0 | 4.19e-01 | 92.2% | 91.6% |
| 3738547 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 38.0 | 3.60e-01 | 76.6% | 78.9% |
| 3640603 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.53 | 43.0 | 2.83e-01 | 94.8% | 72.9% |
| 4637249 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 45.0 | 3.30e-01 | 98.7% | 76.4% |
| 4531216 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 45.0 | 3.22e-01 | 100.0% | 69.2% |
| 3586385 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 35.0 | 3.97e-01 | 84.4% | 100.0% |
| 3986250 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.51 | 37.0 | 2.88e-01 | 79.2% | 63.5% |
| 4469533 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.51 | 43.0 | 3.09e-01 | 100.0% | 73.8% |
D2
medium
residues 104-217
Domain cluster:
representative
D3
medium
residues 218-278
Domain cluster:
rep: MG711465.1__AUV56645.1__X__00026__D83-135
CATH (54)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 52.0 | 4.35e-01 | 83.6% | 54.6% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.68 | 53.0 | 3.95e-01 | 86.9% | 67.1% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.67 | 47.0 | 3.31e-01 | 73.8% | 78.1% |
| 2crhA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 50.0 | 4.26e-01 | 83.6% | 54.9% |
| 6hjfA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 50.0 | 3.66e-01 | 86.9% | 64.8% |
| 2wjwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 54.0 | 4.00e-01 | 96.7% | 54.6% |
| 2lstA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.64 | 47.0 | 3.73e-01 | 80.3% | 76.2% |
| 2jq5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 44.0 | 3.46e-01 | 73.8% | 78.9% |
| 4hz9B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 47.0 | 3.68e-01 | 80.3% | 98.4% |
| 1gep001 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.61 | 49.0 | 3.66e-01 | 93.4% | 64.4% |
| 1qy9A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.60 | 42.0 | 3.19e-01 | 75.4% | 49.1% |
| 4ywrA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 51.0 | 3.54e-01 | 100.0% | 58.3% |
| 3cxgA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 47.0 | 3.85e-01 | 88.5% | 80.3% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.60 | 47.0 | 4.03e-01 | 88.5% | 53.9% |
| 2f51A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 3.76e-01 | 83.6% | 87.4% |
| 2qmmA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.59 | 46.0 | 3.29e-01 | 86.9% | 57.9% |
| 1idpA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 45.0 | 3.44e-01 | 82.0% | 98.0% |
| 2kksA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 46.0 | 3.56e-01 | 86.9% | 43.2% |
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.59 | 47.0 | 3.31e-01 | 93.4% | 59.0% |
| 1uurA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 45.0 | 3.59e-01 | 85.2% | 45.1% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 3.59e-01 | 93.4% | 38.0% |
| 3g7kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 45.0 | 3.34e-01 | 90.2% | 81.0% |
| 2pvzB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.58 | 41.0 | 2.96e-01 | 77.0% | 52.9% |
| 1jg1A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 46.0 | 3.27e-01 | 91.8% | 59.1% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 43.0 | 3.41e-01 | 80.3% | 70.5% |
| 3b7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 42.0 | 3.39e-01 | 75.4% | 99.2% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 47.0 | 3.85e-01 | 96.7% | 61.1% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.57 | 40.0 | 3.50e-01 | 75.4% | 69.0% |
| 2y3vD00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.57 | 40.0 | 3.09e-01 | 77.0% | 42.9% |
| 3b7wA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.57 | 45.0 | 2.79e-01 | 91.8% | 77.9% |
| 5mghA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 44.0 | 2.94e-01 | 93.4% | 74.3% |
| 2o95B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 42.0 | 3.15e-01 | 83.6% | 39.2% |
| 3etcA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 46.0 | 2.76e-01 | 91.8% | 75.6% |
| 1sb2B00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.56 | 41.0 | 3.33e-01 | 80.3% | 75.8% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 44.0 | 3.28e-01 | 93.4% | 50.6% |
| 3ib5A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.55 | 46.0 | 2.95e-01 | 100.0% | 52.0% |
| 7xoiD01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 38.0 | 3.23e-01 | 72.1% | 61.7% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.55 | 42.0 | 3.56e-01 | 90.2% | 61.2% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 41.0 | 3.63e-01 | 86.9% | 100.0% |
| 1g5hA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 42.0 | 2.87e-01 | 93.4% | 78.2% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 36.0 | 3.24e-01 | 72.1% | 51.6% |
| 2yfsA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 45.0 | 2.73e-01 | 100.0% | 28.3% |
| 1e8cA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.53 | 43.0 | 2.97e-01 | 95.1% | 42.4% |
| 2wsuB02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.22e-01 | 90.2% | 50.0% |
| 4ozuA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.73e-01 | 96.7% | 88.8% |
| 3jzmA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.85e-01 | 95.1% | 44.0% |
| 1es2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.75e-01 | 91.8% | 48.1% |
| 3gvzA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 37.0 | 2.52e-01 | 78.7% | 89.8% |
| 2z4dA00 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.51 | 38.0 | 3.30e-01 | 78.7% | 69.8% |
| 3h6rA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 2.87e-01 | 80.3% | 62.5% |
| 4fflA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 39.0 | 2.66e-01 | 85.2% | 22.4% |
| 6syyA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 34.0 | 2.75e-01 | 72.1% | 71.7% |
| 2fpqA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.50 | 39.0 | 2.53e-01 | 98.4% | 92.8% |
| 1uc8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 38.0 | 3.39e-01 | 85.2% | 67.0% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3487184 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.73 | 62.0 | 4.55e-01 | 95.1% | 55.2% |
| 3849532 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.72 | 63.0 | 4.28e-01 | 96.7% | 45.2% |
| 3802041 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.71 | 60.0 | 4.17e-01 | 96.7% | 53.3% |
| 4983120 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.67 | 52.0 | 3.71e-01 | 86.9% | 96.8% |
| 5079388 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.66 | 53.0 | 3.79e-01 | 90.2% | 85.3% |
| 3542657 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.66 | 57.0 | 4.00e-01 | 96.7% | 48.9% |
| 4014340 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.64 | 53.0 | 3.30e-01 | 90.2% | 31.5% |
| 3913735 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.64 | 55.0 | 3.94e-01 | 96.7% | 51.7% |
| 3204821 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.64 | 52.0 | 3.25e-01 | 90.2% | 31.3% |
| 4937019 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.63 | 42.0 | 3.75e-01 | 70.5% | 63.3% |
| 3882636 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.63 | 46.0 | 3.67e-01 | 80.3% | 40.0% |
| 3934141 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 49.0 | 3.53e-01 | 86.9% | 92.1% |
| 3970256 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.62 | 52.0 | 3.99e-01 | 96.7% | 50.0% |
| 4991488 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.62 | 50.0 | 3.78e-01 | 95.1% | 52.1% |
| 3239884 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.62 | 47.0 | 4.09e-01 | 88.5% | 56.2% |
| 3407610 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 51.0 | 4.15e-01 | 95.1% | 70.0% |
| 3585489 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.61 | 44.0 | 2.73e-01 | 77.0% | 20.3% |
| 4938029 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.61 | 43.0 | 3.72e-01 | 73.8% | 59.2% |
| 3930621 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.61 | 47.0 | 3.50e-01 | 90.2% | 38.9% |
| 3956284 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.61 | 50.0 | 3.82e-01 | 91.8% | 70.3% |
| 3279726 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.61 | 47.0 | 3.39e-01 | 86.9% | 53.2% |
| 4121071 | 2484.1.1.55 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom | 0.61 | 49.0 | 3.63e-01 | 93.4% | 72.0% |
| 3418844 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.61 | 47.0 | 3.20e-01 | 93.4% | 77.9% |
| 3312553 | 222.1.1.5 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA | 0.61 | 48.0 | 3.98e-01 | 91.8% | 72.5% |
| None | — | 0.61 | 48.0 | 3.62e-01 | 90.2% | 84.4% | |
| 2604100 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.60 | 47.0 | 3.04e-01 | 91.8% | 56.9% |
| 5008981 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.60 | 46.0 | 2.91e-01 | 90.2% | 58.2% |
| 4046488 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.60 | 48.0 | 4.15e-01 | 96.7% | 90.0% |
| 1094864 | 232.1.1.2 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › ADI | 0.60 | 49.0 | 3.03e-01 | 96.7% | 77.6% |
| 3270076 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.59 | 48.0 | 3.16e-01 | 90.2% | 91.1% |
| 3212241 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.59 | 43.0 | 3.61e-01 | 82.0% | 45.8% |
| 2557291 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.59 | 48.0 | 3.06e-01 | 95.1% | 87.4% |
| 5030870 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.59 | 40.0 | 3.54e-01 | 75.4% | 47.8% |
| 3175837 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 46.0 | 3.63e-01 | 91.8% | 80.0% |
| 5028106 | 2488.1.1.8 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 | 0.59 | 45.0 | 3.27e-01 | 85.2% | 58.9% |
| 3960581 | 4091.1.1.0 ↗ | beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like | 0.59 | 43.0 | 3.40e-01 | 78.7% | 84.4% |
| None | — | 0.58 | 47.0 | 3.24e-01 | 91.8% | 46.8% | |
| 1954221 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.58 | 38.0 | 3.58e-01 | 82.0% | 54.7% |
| 1937542 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.58 | 42.0 | 3.30e-01 | 86.9% | 37.3% |
| 4017997 | 5.1.2.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop | 0.58 | 41.0 | 2.70e-01 | 75.4% | 33.7% |
| 4483827 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.57 | 45.0 | 3.44e-01 | 88.5% | 89.0% |
| 3916526 | 719.1.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 | 0.57 | 43.0 | 3.46e-01 | 83.6% | 91.5% |
| 3957673 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.56 | 44.0 | 3.17e-01 | 90.2% | 52.5% |
| 3509951 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.56 | 46.0 | 3.17e-01 | 95.1% | 86.4% |
| 4018808 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.56 | 41.0 | 3.37e-01 | 80.3% | 92.5% |
| 4596146 | 243.1.1.104 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Imm-NTF2 | 0.56 | 42.0 | 3.33e-01 | 80.3% | 93.8% |
| 3486812 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.56 | 41.0 | 3.21e-01 | 83.6% | 89.0% |
| 3275416 | 5.1.4.90 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 | 0.55 | 45.0 | 2.84e-01 | 93.4% | 42.5% |
| 3433417 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.55 | 41.0 | 3.53e-01 | 82.0% | 79.0% |
| 3738444 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 41.0 | 3.32e-01 | 83.6% | 69.2% |
| 5016946 | 4312.1.1.22 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › PF27370 | 0.54 | 41.0 | 3.65e-01 | 83.6% | 97.8% |
| 3264437 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 35.0 | 3.07e-01 | 73.8% | 40.0% |
| 3573052 | 10.12.1.122 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF29328 | 0.54 | 46.0 | 3.29e-01 | 100.0% | 94.4% |
| 3966067 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.53 | 44.0 | 2.93e-01 | 96.7% | 57.3% |
| 3789432 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 42.0 | 2.54e-01 | 90.2% | 39.4% |
| 3591998 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.53 | 42.0 | 3.53e-01 | 90.2% | 52.7% |
| 3638210 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.52 | 45.0 | 3.18e-01 | 100.0% | 33.7% |
| 4995163 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.52 | 41.0 | 2.87e-01 | 93.4% | 67.1% |
| 3993689 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 37.0 | 3.57e-01 | 80.3% | 94.7% |
| 3459205 | 5.1.4.156 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 | 0.51 | 40.0 | 2.40e-01 | 95.1% | 55.9% |
| 3781393 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 40.0 | 3.71e-01 | 88.5% | 79.8% |
| 3618164 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.51 | 42.0 | 2.46e-01 | 96.7% | 42.0% |
| 4113608 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.51 | 41.0 | 2.85e-01 | 95.1% | 40.8% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.51 | 39.0 | 3.54e-01 | 82.0% | 75.0% |
| 4075999 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.51 | 42.0 | 2.86e-01 | 96.7% | 32.3% |
| 5060548 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 38.0 | 2.70e-01 | 85.2% | 34.9% |
D4
medium
residues 279-347
Domain cluster:
representative