←Back to structures
PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00050
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00050
Identity
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-54
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00095__D15-63
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ptaA03 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.58 | 47.0 | 3.46e-01 | 100.0% | 83.7% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.58 | 43.0 | 3.74e-01 | 85.2% | 71.7% |
| 1ji6A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 45.0 | 3.23e-01 | 87.0% | 69.1% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.58 | 44.0 | 2.80e-01 | 88.9% | 43.2% |
| 1rjaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 46.0 | 3.92e-01 | 96.3% | 63.0% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 45.0 | 3.67e-01 | 96.3% | 56.8% |
| 3c7fA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 39.0 | 3.01e-01 | 75.9% | 87.3% |
| 5z8lA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 42.0 | 3.42e-01 | 87.0% | 98.3% |
| 2izvA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 46.0 | 3.39e-01 | 98.1% | 36.2% |
| 3lbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 41.0 | 2.86e-01 | 83.3% | 30.0% |
| 1qypA00 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 39.0 | 3.87e-01 | 75.9% | 93.0% |
| 4hd5A01 | 2.60.40.3760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.35e-01 | 77.8% | 61.9% |
| 1xexB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 2.77e-01 | 72.2% | 26.7% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.55 | 41.0 | 3.15e-01 | 87.0% | 80.8% |
| 2c9wA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 43.0 | 3.61e-01 | 98.1% | 56.6% |
| 2dm4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.22e-01 | 74.1% | 56.4% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 36.0 | 3.61e-01 | 70.4% | 72.7% |
| 4dlqA01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.54 | 41.0 | 3.98e-01 | 83.3% | 81.7% |
| 2vifA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 43.0 | 3.47e-01 | 98.1% | 47.6% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 36.0 | 3.02e-01 | 74.1% | 58.2% |
| 1kmdA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 36.0 | 2.92e-01 | 77.8% | 34.2% |
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 34.0 | 3.37e-01 | 72.2% | 60.7% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.10e-01 | 74.1% | 48.9% |
| 3i1aA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 37.0 | 3.10e-01 | 77.8% | 69.9% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.51 | 34.0 | 2.81e-01 | 74.1% | 33.3% |
| 1rjtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 34.0 | 3.20e-01 | 74.1% | 52.1% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.51 | 36.0 | 3.33e-01 | 75.9% | 64.8% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.50 | 38.0 | 3.64e-01 | 88.9% | 74.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3502143 | 59.1.1.8 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › TFIIF_beta_N | 0.62 | 41.0 | 3.24e-01 | 70.4% | 69.2% |
| 3927236 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.61 | 45.0 | 3.43e-01 | 81.5% | 54.5% |
| 3474415 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.60 | 42.0 | 3.52e-01 | 74.1% | 49.5% |
| 3413325 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 46.0 | 2.83e-01 | 88.9% | 34.7% |
| 3454284 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.59 | 42.0 | 2.72e-01 | 79.6% | 15.1% |
| 3934455 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.59 | 45.0 | 3.66e-01 | 88.9% | 58.3% |
| 3195150 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.57 | 39.0 | 2.65e-01 | 72.2% | 28.8% |
| 3476511 | 4357.1.1.4 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 | 0.57 | 42.0 | 4.10e-01 | 83.3% | 76.2% |
| 3939717 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.57 | 39.0 | 2.71e-01 | 72.2% | 27.9% |
| 3933443 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 41.0 | 3.91e-01 | 85.2% | 80.0% |
| None | — | 0.56 | 42.0 | 3.05e-01 | 88.9% | 68.3% | |
| 3497365 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 38.0 | 3.82e-01 | 74.1% | 74.5% |
| 3911822 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.54 | 41.0 | 4.07e-01 | 87.0% | 88.3% |
| 3954143 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 43.0 | 3.13e-01 | 94.4% | 77.1% |
| 5081857 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.54 | 39.0 | 3.74e-01 | 79.6% | 95.4% |
| 3258687 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.54 | 36.0 | 3.45e-01 | 70.4% | 63.1% |
| 3479549 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 3.21e-01 | 92.6% | 40.0% |
| 5074559 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.52 | 37.0 | 2.92e-01 | 81.5% | 95.7% |
| 3258657 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.52 | 35.0 | 3.35e-01 | 74.1% | 65.7% |
| 3684173 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.52 | 36.0 | 3.07e-01 | 74.1% | 65.3% |
| 4026431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 38.0 | 3.73e-01 | 87.0% | 75.4% |
| 4951736 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.51 | 39.0 | 3.45e-01 | 88.9% | 64.4% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.51 | 34.0 | 3.00e-01 | 70.4% | 45.6% |
| 3447819 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.51 | 34.0 | 3.24e-01 | 72.2% | 61.4% |
| 3508441 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.51 | 37.0 | 3.17e-01 | 79.6% | 71.6% |
| 3473306 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.50 | 34.0 | 3.17e-01 | 72.2% | 53.3% |
| 4182876 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.50 | 35.0 | 2.51e-01 | 77.8% | 22.0% |
| 3471995 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.50 | 33.0 | 2.93e-01 | 72.2% | 40.0% |
| 3487913 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 34.0 | 3.04e-01 | 72.2% | 47.1% |