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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00069
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00069
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-79
Domain cluster:
representative
D2
medium
residues 80-155
Domain cluster:
rep: IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_229251_229643__D51-122
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 56.0 | 5.45e-01 | 77.6% | 94.0% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 52.0 | 4.83e-01 | 73.7% | 71.9% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.67 | 47.0 | 4.21e-01 | 76.3% | 62.9% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.66 | 49.0 | 3.86e-01 | 81.6% | 83.1% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.65 | 46.0 | 3.83e-01 | 75.0% | 68.8% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.64 | 47.0 | 4.36e-01 | 78.9% | 83.2% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.62 | 45.0 | 4.19e-01 | 76.3% | 96.9% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.62 | 44.0 | 3.68e-01 | 73.7% | 74.4% |
| 2yx8A00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.62 | 44.0 | 4.34e-01 | 75.0% | 86.4% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.62 | 41.0 | 4.36e-01 | 72.4% | 79.1% |
| 5mlc900 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 47.0 | 4.24e-01 | 85.5% | 96.3% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 46.0 | 3.23e-01 | 88.2% | 39.9% |
| 7e5aB02 | 1.20.1000.10 | Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain | 0.57 | 49.0 | 3.92e-01 | 100.0% | 57.3% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.53 | 40.0 | 3.74e-01 | 82.9% | 64.6% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.53 | 39.0 | 3.73e-01 | 78.9% | 74.2% |
| 4ii2A02 | 3.40.50.12550 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 2 | 0.53 | 42.0 | 3.07e-01 | 86.8% | 97.7% |
| 2hf9B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.78e-01 | 76.3% | 99.0% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.52 | 37.0 | 3.54e-01 | 77.6% | 80.9% |
| 5f42A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.51 | 36.0 | 3.52e-01 | 78.9% | 68.3% |
| 2ex3B02 | 1.20.1270.230 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain | 0.51 | 37.0 | 3.67e-01 | 86.8% | 72.8% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.50 | 37.0 | 3.66e-01 | 78.9% | 75.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996406 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.79 | 57.0 | 5.94e-01 | 76.3% | 90.0% |
| 3605439 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.77 | 59.0 | 6.17e-01 | 81.6% | 92.9% |
| 4032384 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.74 | 55.0 | 5.48e-01 | 80.3% | 95.0% |
| 3715874 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 49.0 | 3.49e-01 | 76.3% | 24.3% |
| 4974685 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 50.0 | 4.88e-01 | 77.6% | 96.4% |
| 3448742 | 109.7.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › SNAP | 0.67 | 50.0 | 5.21e-01 | 78.9% | 100.0% |
| 3530149 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.67 | 49.0 | 4.32e-01 | 77.6% | 70.4% |
| 4019468 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 49.0 | 4.36e-01 | 78.9% | 55.8% |
| 3811999 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.65 | 44.0 | 3.71e-01 | 71.1% | 60.8% |
| 3949011 | 3706.1.1.1 ↗ | alpha bundles › Conserved type six secretion component TssL-related › Conserved type six secretion component TssL-related › Conserved type six secretion component TssL-related › DotU | 0.65 | 46.0 | 3.73e-01 | 76.3% | 48.4% |
| 3253938 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.64 | 48.0 | 4.27e-01 | 81.6% | 73.9% |
| 4968568 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.64 | 45.0 | 3.46e-01 | 73.7% | 34.3% |
| 3606445 | 150.1.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › COQ7 | 0.64 | 50.0 | 3.79e-01 | 86.8% | 81.5% |
| 2992201 | 6171.1.1.1 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD | 0.64 | 48.0 | 4.32e-01 | 82.9% | 77.3% |
| 1902251 | 612.1.1.4 ↗ | alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p10 | 0.60 | 42.0 | 3.62e-01 | 72.4% | 53.8% |
| 3927989 | 4133.1.1.1 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT | 0.59 | 46.0 | 4.37e-01 | 85.5% | 78.9% |
| 3997940 | 4133.1.1.1 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT | 0.57 | 45.0 | 4.19e-01 | 85.5% | 72.6% |
| 3984062 | 603.1.1.217 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PqiA | 0.57 | 42.0 | 3.98e-01 | 84.2% | 100.0% |
| 3681341 | 650.1.1.8 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Ovate | 0.57 | 40.0 | 4.25e-01 | 73.7% | 92.3% |
| 3930431 | 3065.1.1.0 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins | 0.56 | 43.0 | 4.02e-01 | 84.2% | 84.2% |
| 3601654 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 38.0 | 2.34e-01 | 77.6% | 67.1% |
| 5061757 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.51 | 39.0 | 4.11e-01 | 82.9% | 98.6% |