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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00105
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00105
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-52
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.76 | 62.0 | 5.63e-01 | 90.0% | 77.6% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.75 | 47.0 | 3.86e-01 | 98.0% | 36.8% |
| 6k4yI00 | 1.10.1810.10 | Mainly Alpha › Orthogonal Bundle › Anti-sigma factor AsiA › Anti-Sigma Factor A | 0.71 | 54.0 | 4.44e-01 | 82.0% | 78.4% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 3.56e-01 | 82.0% | 89.4% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.62 | 38.0 | 2.59e-01 | 90.0% | 17.0% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.61 | 47.0 | 4.38e-01 | 82.0% | 90.3% |
| 2fq3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.37e-01 | 72.0% | 40.0% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.59 | 42.0 | 3.94e-01 | 76.0% | 88.7% |
| 2f1kC02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.58 | 45.0 | 3.58e-01 | 88.0% | 64.6% |
| 2g5cB02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.58 | 45.0 | 3.59e-01 | 88.0% | 64.5% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 48.0 | 3.85e-01 | 100.0% | 54.9% |
| 3optA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.55 | 39.0 | 2.56e-01 | 88.0% | 14.5% |
| 2hdoA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 41.0 | 3.88e-01 | 90.0% | 98.4% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 46.0 | 4.48e-01 | 100.0% | 90.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.52 | 47.0 | 3.77e-01 | 100.0% | 79.2% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.52 | 41.0 | 3.46e-01 | 88.0% | 96.6% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.52 | 47.0 | 3.65e-01 | 100.0% | 74.5% |
| 2c0uA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 46.0 | 3.12e-01 | 98.0% | 55.6% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.15e-01 | 80.0% | 48.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998355 | 190.1.1.25 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 | 0.78 | 70.0 | 6.20e-01 | 98.0% | 98.6% |
| 4033774 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 44.0 | 4.13e-01 | 90.0% | 51.7% |
| 4369318 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 43.0 | 4.09e-01 | 90.0% | 51.7% |
| 5079104 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.69 | 44.0 | 2.67e-01 | 72.0% | 9.7% |
| 4960529 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.63 | 52.0 | 5.07e-01 | 100.0% | 85.5% |
| 3716897 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.63 | 51.0 | 4.47e-01 | 90.0% | 66.7% |
| 4096608 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 3.57e-01 | 76.0% | 80.0% |
| 4373972 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.62 | 48.0 | 3.80e-01 | 98.0% | 40.4% |
| 5049534 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 3.52e-01 | 100.0% | 41.2% |
| 4355181 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.60 | 42.0 | 3.91e-01 | 76.0% | 92.3% |
| 4291138 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.60 | 47.0 | 3.62e-01 | 92.0% | 42.4% |
| 3286628 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.56 | 39.0 | 3.40e-01 | 72.0% | 56.0% |
| 4033688 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.55 | 38.0 | 3.43e-01 | 72.0% | 61.4% |
| 5033689 | 101.1.2.368 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_36 | 0.55 | 39.0 | 3.72e-01 | 74.0% | 70.0% |
| 5060746 | 4159.1.1.0 ↗ | alpha arrays › SP0561-like › SP0561-like › SP0561-like | 0.53 | 42.0 | 3.93e-01 | 90.0% | 98.5% |
| 3507982 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.52 | 47.0 | 3.66e-01 | 100.0% | 57.1% |
| 4010073 | 101.1.2.368 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_36 | 0.52 | 39.0 | 3.37e-01 | 80.0% | 81.3% |
| 3490347 | 101.1.2.97 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA_C | 0.50 | 40.0 | 3.49e-01 | 86.0% | 58.7% |