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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00116
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00116
Identity
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-91
Domain cluster:
rep: SRR1747040_scaffold_2_curated_closed_complete_prodigal-single.1__X__X__00135__D18-90
D2
high
residues 102-169
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pn5A07 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 4.39e-01 | 100.0% | 63.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 36.0 | 3.67e-01 | 91.2% | 63.8% |
| 6sk6A00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 49.0 | 3.30e-01 | 100.0% | 35.5% |
| 7xlqD01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 45.0 | 3.73e-01 | 91.2% | 81.4% |
| 4xuoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 45.0 | 3.52e-01 | 100.0% | 40.4% |
| 8hpoK01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 43.0 | 2.78e-01 | 91.2% | 93.8% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 38.0 | 3.93e-01 | 97.1% | 79.0% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 37.0 | 3.86e-01 | 79.4% | 76.6% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.55 | 41.0 | 2.65e-01 | 80.9% | 27.8% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 38.0 | 3.91e-01 | 75.0% | 78.5% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.44e-01 | 100.0% | 62.0% |
| 4ao5B01 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.53 | 41.0 | 3.56e-01 | 100.0% | 52.1% |
| 1mg2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 38.0 | 2.47e-01 | 80.9% | 32.5% |
| 4b0bB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 43.0 | 3.38e-01 | 100.0% | 53.3% |
| 2vzsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 3.82e-01 | 100.0% | 61.8% |
| 3weoA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 31.0 | 2.78e-01 | 98.5% | 39.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4514735 | 1049.2.1.4 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J | 0.79 | 56.0 | 3.98e-01 | 100.0% | 26.3% |
| 3245395 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 44.0 | 2.81e-01 | 76.5% | 14.3% |
| 5056431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 48.0 | 3.98e-01 | 98.5% | 47.2% |
| 5062762 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.58 | 41.0 | 3.58e-01 | 75.0% | 90.9% |
| 3269422 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 47.0 | 3.18e-01 | 95.6% | 33.3% |
| 3895559 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 48.0 | 3.35e-01 | 100.0% | 34.2% |
| 3174319 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 44.0 | 2.75e-01 | 92.6% | 96.4% |
| 4942321 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.55 | 45.0 | 4.04e-01 | 95.6% | 86.0% |
| 1569478 | 527.1.1.1 ↗ | beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Orthopox_35kD | 0.54 | 45.0 | 3.61e-01 | 98.5% | 73.2% |
| 3172941 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 42.0 | 2.65e-01 | 89.7% | 96.1% |
| 2490256 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.54 | 38.0 | 3.90e-01 | 75.0% | 77.3% |
| 3167783 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 43.0 | 2.74e-01 | 94.1% | 96.8% |
| 4197077 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.54 | 36.0 | 3.23e-01 | 73.5% | 44.5% |
| 3731840 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.52 | 41.0 | 2.98e-01 | 89.7% | 69.8% |
| 4022601 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 42.0 | 3.73e-01 | 95.6% | 83.6% |
| 4457744 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 40.0 | 2.71e-01 | 91.2% | 29.1% |
| 4120870 | 2.1.1.127 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 | 0.51 | 36.0 | 3.16e-01 | 75.0% | 88.2% |
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.50 | 39.0 | 3.16e-01 | 85.3% | 73.6% |
| 4027653 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.50 | 41.0 | 3.45e-01 | 92.6% | 93.6% |