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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00135
Bact-VirPHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00135
Identity
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.93 | 63.0 | 6.38e-01 | 70.1% | 71.2% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.82 | 54.0 | 5.18e-01 | 73.1% | 59.7% |
| 3q15B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.81 | 52.0 | 3.24e-01 | 70.1% | 13.3% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 56.0 | 6.20e-01 | 71.6% | 98.0% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.80 | 56.0 | 4.57e-01 | 73.1% | 42.1% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.79 | 53.0 | 5.16e-01 | 70.1% | 62.7% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.78 | 50.0 | 5.56e-01 | 70.1% | 84.6% |
| 2jbwA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.76 | 53.0 | 4.61e-01 | 73.1% | 47.6% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 52.0 | 5.75e-01 | 70.1% | 90.6% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 55.0 | 3.98e-01 | 77.6% | 28.9% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 51.0 | 4.92e-01 | 71.6% | 62.2% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 51.0 | 3.66e-01 | 71.6% | 30.3% |
| 1yuzB01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 58.0 | 4.56e-01 | 83.6% | 76.8% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.74 | 54.0 | 5.05e-01 | 85.1% | 61.9% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.73 | 52.0 | 4.08e-01 | 71.6% | 35.8% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.73 | 55.0 | 4.21e-01 | 80.6% | 39.1% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.73 | 49.0 | 4.90e-01 | 70.1% | 66.2% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.73 | 58.0 | 4.28e-01 | 91.0% | 33.7% |
| 3e0sA00 | 1.40.20.10 | Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain | 0.73 | 54.0 | 3.50e-01 | 79.1% | 19.6% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 56.0 | 4.09e-01 | 83.6% | 65.2% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.72 | 56.0 | 4.31e-01 | 83.6% | 77.2% |
| 2fbaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.71 | 49.0 | 2.91e-01 | 71.6% | 14.8% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.70 | 47.0 | 5.05e-01 | 70.1% | 85.7% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.69 | 49.0 | 4.84e-01 | 74.6% | 75.7% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 54.0 | 5.64e-01 | 85.1% | 98.4% |
| 1iipA02 | 1.10.150.160 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.69 | 63.0 | 5.78e-01 | 100.0% | 80.0% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.69 | 47.0 | 3.91e-01 | 71.6% | 75.4% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 58.0 | 4.75e-01 | 98.5% | 55.6% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.65 | 46.0 | 4.39e-01 | 74.6% | 69.6% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 52.0 | 4.58e-01 | 89.6% | 60.8% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 41.0 | 4.27e-01 | 73.1% | 86.4% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 43.0 | 4.03e-01 | 83.6% | 64.8% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.54 | 47.0 | 3.45e-01 | 95.5% | 73.6% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058934 | 2004.1.1.1221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 | 0.91 | 62.0 | 3.81e-01 | 70.1% | 14.7% |
| 4937579 | 601.18.1.31 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › DUF2178 | 0.84 | 60.0 | 4.80e-01 | 74.6% | 42.4% |
| 5009848 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.83 | 61.0 | 5.18e-01 | 77.6% | 76.2% |
| 5016679 | 605.1.1.356 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2178 | 0.82 | 57.0 | 4.58e-01 | 73.1% | 38.3% |
| 4076485 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.82 | 58.0 | 5.29e-01 | 73.1% | 57.6% |
| 3213282 | 616.1.1.21 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 | 0.82 | 57.0 | 5.51e-01 | 73.1% | 66.7% |
| 3407072 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.81 | 58.0 | 5.44e-01 | 74.6% | 62.5% |
| 3829175 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.81 | 56.0 | 4.56e-01 | 71.6% | 40.0% |
| 3386800 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.79 | 56.0 | 5.85e-01 | 73.1% | 98.3% |
| 5009796 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.79 | 56.0 | 4.87e-01 | 74.6% | 50.0% |
| 4993041 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.79 | 56.0 | 5.29e-01 | 74.6% | 66.3% |
| 4324075 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.79 | 53.0 | 6.13e-01 | 71.6% | 97.9% |
| 4551675 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.78 | 63.0 | 5.28e-01 | 86.6% | 56.4% |
| 4204169 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.77 | 53.0 | 3.89e-01 | 71.6% | 29.2% |
| 5020952 | 605.1.1.356 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2178 | 0.76 | 55.0 | 4.46e-01 | 83.6% | 40.8% |
| 4543016 | 109.4.1.1690 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17, TPR_16 | 0.74 | 50.0 | 3.94e-01 | 70.1% | 55.7% |
| 5020290 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.74 | 53.0 | 5.66e-01 | 83.6% | 92.7% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.74 | 50.0 | 4.91e-01 | 70.1% | 66.2% |
| 3684276 | 192.17.1.13 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › LUC7 | 0.72 | 64.0 | 4.20e-01 | 97.0% | 25.3% |
| 3578336 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.72 | 49.0 | 4.38e-01 | 70.1% | 55.8% |
| 3286104 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.72 | 56.0 | 4.88e-01 | 89.6% | 56.0% |
| 4286656 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.71 | 49.0 | 4.16e-01 | 71.6% | 44.5% |
| 3739546 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.71 | 50.0 | 3.16e-01 | 74.6% | 15.3% |
| 4085606 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.70 | 56.0 | 4.79e-01 | 88.1% | 54.5% |
| 2768756 | 5073.1.1.4 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N | 0.70 | 58.0 | 4.83e-01 | 95.5% | 51.7% |
| 4119718 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.69 | 51.0 | 4.71e-01 | 80.6% | 65.6% |
| 4171766 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.69 | 51.0 | 4.69e-01 | 80.6% | 62.2% |
| 4028827 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.67 | 57.0 | 3.79e-01 | 94.0% | 31.9% |
| 4450827 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.66 | 43.0 | 4.55e-01 | 71.6% | 75.0% |
| 3273435 | 604.12.1.5 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C | 0.66 | 49.0 | 4.66e-01 | 85.1% | 66.3% |
| 4024585 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 53.0 | 4.82e-01 | 98.5% | 71.6% |
| 4029448 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 48.0 | 4.08e-01 | 100.0% | 55.2% |
D2
medium
residues 68-152
Domain cluster:
rep: KU878967.1__ANA49992.1__X__00024__D176-276
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03796.22 best | DnaB_C | 51.8 | 1.10e-13 | 95.3% | 31.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h74A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 43.0 | 3.11e-01 | 90.6% | 80.9% |
| 1sm7A00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.52 | 37.0 | 3.51e-01 | 77.6% | 85.3% |
| 2lq3A01 | 1.10.1660.80 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 35.0 | 3.70e-01 | 80.0% | 81.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945366 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.90 | 77.0 | 5.41e-01 | 89.4% | 95.7% |
| 5043969 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.89 | 74.0 | 6.60e-01 | 87.1% | 76.3% |
| 5054855 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.88 | 72.0 | 7.08e-01 | 85.9% | 83.3% |
| 5067460 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.88 | 78.0 | 5.37e-01 | 94.1% | 90.6% |
| 3766053 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.85 | 71.0 | 5.48e-01 | 88.2% | 45.4% |
| 4935234 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.84 | 74.0 | 5.19e-01 | 92.9% | 93.6% |
| 5020724 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.84 | 68.0 | 6.87e-01 | 85.9% | 87.1% |