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PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00193

Bact-Vir

PHAGE-A6--js4906-27-3_S30_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00193

Identity

Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-37
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.65 50.0 4.41e-01 97.3% 78.5%
1o5wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 44.0 2.78e-01 70.3% 78.7%
2qs8A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 49.0 2.90e-01 89.2% 23.2%
3nkqA03 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.61 51.0 2.95e-01 100.0% 24.1%
1yumA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 45.0 2.90e-01 89.2% 18.4%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.59 41.0 2.57e-01 83.8% 16.0%
3ecaA02 3.40.50.40 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 44.0 3.19e-01 83.8% 35.1%
3okzB00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.56 45.0 2.72e-01 97.3% 78.3%
2iaiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 42.0 3.52e-01 86.5% 47.7%
3vtfA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 2.90e-01 100.0% 34.6%
2cclB00 1.10.1330.10 Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain 0.54 42.0 3.79e-01 97.3% 64.5%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.19e-01 86.5% 58.1%
2y0eB03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 42.0 2.72e-01 97.3% 16.9%
3foeA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 41.0 3.52e-01 91.9% 82.6%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 37.0 3.13e-01 89.2% 55.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946272 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.82 68.0 4.47e-01 100.0% 27.3%
None — 0.78 61.0 3.48e-01 89.2% 9.7%
2841796 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 4.93e-01 81.1% 68.2%
3189488 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.70 55.0 4.03e-01 94.6% 53.6%
3699724 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 50.0 4.30e-01 97.3% 67.1%
5057661 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.64 50.0 4.04e-01 97.3% 55.3%
3497159 176.1.1.1 ↗ alpha arrays › Annexin › Annexin › Annexin › Annexin 0.60 45.0 3.55e-01 97.3% 36.0%
165311 101.1.6.3 ↗ alpha arrays › HTH › HTH › TrpR › DUF1153 0.52 45.0 3.32e-01 97.3% 93.7%